suba logo
AT4G38900.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Basic-leucine zipper (bZIP) transcription factor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Basic-leucine zipper (bZIP) transcription factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: Basic-leucine zipper (bZIP) transcription factor family protein (TAIR:AT2G21230.1); Has 2903 Blast hits to 2067 proteins in 270 species: Archae - 2; Bacteria - 286; Metazoa - 482; Fungi - 174; Plants - 835; Viruses - 0; Other Eukaryotes - 1124 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410II1QeggNOG:ENOG410YAHKEMBL:AF401297EMBL:AL035656EMBL:AL161594EMBL:CP002687EnsemblPlants:AT4G38900
EnsemblPlants:AT4G38900.1entrez:830045ExpressionAtlas:Q9T0J7GeneID:830045GO:GO:0003700GO:GO:0005634GO:GO:0005737
GO:GO:0005829GO:GO:0043565Gramene:AT4G38900.1hmmpanther:PTHR13690hmmpanther:PTHR13690:SF76HOGENOM:HOG000239687InterPro:IPR004827
ncoils:CoilOMA:LNMHQLQPfam:PF00170Pfscan:PS50217PhylomeDB:Q9T0J7PIR:T06089PROSITE:PS50217
Proteomes:UP000006548RefSeq:NP_195601.1SMART:SM00338SMR:Q9T0J7STRING:3702.AT4G38900.1SUPFAM:SSF57959TAIR:AT4G38900
UniGene:At.2835UniProt:Q9T0J7
Coordinates (TAIR10) chr4:-:18139564..18141520
Molecular Weight (calculated) 61159.90 Da
IEP (calculated) 7.11
GRAVY (calculated) -0.93
Length 553 amino acids
Sequence (TAIR10)
(BLAST)
001: MGDTEKCNSD MIQRLHSSFG TTSSSIPKNP ISQLDLNPNF IRSSAPQFSK PFSDSGKRIG VPPSHPNLIP PTSPFSQIPT TRQPGSHNFN PGGANHSRSM
101: SQPNSFFSFD SLPPLSPSPF RDHDVSMEDR DSGVFNSNHS LPPSPFTRCN STSSSSLRVG ESLPPRKSHR RSNSDIPSGF NSMPLIPPRP LERSFSGGEC
201: ADWSKSNPFV KKESSCEREG VGEREAMDDL FSAYMNLENI DVLNSSEADD SKNGNENRDD MESSRASGTK TNGSDTEGES SSVNESANNN MNSSGEKRES
301: VKRRAAGGDI APTTRHYRSV SVDSCFMEKL SFGDESLKPP PSPGSMSRKV SPTNSVDGNS GAAFSIEFNN GEFTAAEMKK IMANDKLAEM AMSDPKRVKR
401: NDPLFRILAN RQSAARSKER KMRYIVELEH KVQTLQTEAT TLSAQLTLLQ RDMMGLTNQN NELKFRLQAM EQQARLRDAL NEALNGEVQR LKLAIGESSQ
501: NESERSKMQS LNAEMFQQLN ISQLRQQPQQ MQQQSHQQNH QNGTMATKSE SNE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)