suba logo
AT4G38860.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SAUR-like auxin-responsive protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SAUR-like auxin-responsive protein family ; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: SAUR-like auxin-responsive protein family (TAIR:AT2G21220.1); Has 1286 Blast hits to 1273 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1285; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JVA8eggNOG:ENOG411063BEMBL:AK221793EMBL:AK230398
EMBL:AL035656EMBL:AL161594EMBL:BT011706EMBL:CP002687
EnsemblPlants:AT4G38860EnsemblPlants:AT4G38860.1entrez:830041GeneID:830041
GO:GO:0009733Gramene:AT4G38860.1hmmpanther:PTHR31374hmmpanther:PTHR31374:SF41
HOGENOM:HOG000238628InterPro:IPR003676KEGG:ath:AT4G38860KO:K14488
OMA:IIIRCSSPfam:PF02519PhylomeDB:Q9T0J3PIR:T06085
Proteomes:UP000006548RefSeq:NP_195597.1STRING:3702.AT4G38860.1TAIR:AT4G38860
UniGene:At.31140UniProt:Q9T0J3
Coordinates (TAIR10) chr4:+:18130357..18130674
Molecular Weight (calculated) 12002.80 Da
IEP (calculated) 8.49
GRAVY (calculated) -0.10
Length 105 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVKRSSKLT QTAMLKQILK RCSSLGKKQC YDEEGLPLDV PKGHFPVYVG EKRTRYIVPI SFLTHPEFLI LLQQAEEEFG FRHDMGGLTI PCEEVVFLSL
101: TSMIR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)