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AT4G38770.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : proline-rich protein 4
Curator
Summary (TAIR10)
Encodes one of four proline-rich proteins in Arabidopsis which are predicted to localize to the cell wall. Transcripts are most abundant in aerial organs of the plant.
Computational
Description (TAIR10)
proline-rich protein 4 (PRP4); CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen/extensin (InterPro:IPR006041); BEST Arabidopsis thaliana protein match is: proline-rich protein 2 (TAIR:AT2G21140.1); Has 142477 Blast hits to 44863 proteins in 2266 species: Archae - 463; Bacteria - 33947; Metazoa - 50713; Fungi - 14839; Plants - 19672; Viruses - 4087; Other Eukaryotes - 18756 (source: NCBI BLink).
Protein Annotations
BioGrid:15312eggNOG:ENOG410IZJXeggNOG:ENOG410YNJGEMBL:AF110988EMBL:AF151217EMBL:AK317683EMBL:AL035656
EMBL:AL161594EMBL:AY054212EMBL:AY086263EMBL:AY092992EMBL:BT000944EMBL:BT001204EMBL:CP002687
EnsemblPlants:AT4G38770EnsemblPlants:AT4G38770.1entrez:830032GeneID:830032Genevisible:Q9T0I5GO:GO:0005576GO:GO:0005618
Gramene:AT4G38770.1hmmpanther:PTHR23201hmmpanther:PTHR23201:SF16HOGENOM:HOG000239903InParanoid:Q9T0I5IntAct:Q9T0I5KEGG:ath:AT4G38770
OMA:FSPEICVPaxDb:Q9T0I5Pfam:PF01190Pfam:Q9T0I5PIR:T06076PRIDE:Q9T0I5PRO:PR:Q9T0I5
ProteinModelPortal:Q9T0I5Proteomes:UP000006548RefSeq:NP_195588.1STRING:3702.AT4G38770.1TAIR:AT4G38770tair10-symbols:ATPRP4tair10-symbols:PRP4
UniGene:At.21600UniGene:At.22021UniGene:At.23968UniGene:At.39306UniGene:At.74752UniProt:Q9T0I5
Coordinates (TAIR10) chr4:-:18097009..18098448
Molecular Weight (calculated) 49138.90 Da
IEP (calculated) 10.32
GRAVY (calculated) -0.43
Length 448 amino acids
Sequence (TAIR10)
(BLAST)
001: MRILPEPRGS VPCLLLLVSV LLSATLSLAR VVEVVGYAES KIKTPHAFSG LRVTIDCKVN KGHFVTKGSG NIDDKGKFGL NIPHDIVSDN GALKEECYAQ
101: LHSAAGTPCP AHDGLESTKI VFLSKSGDKH ILGLKQNLKF SPEICVSKFF WPMPKLPPFK GFDHPFPLPP PLELPPFLKK PCPPKYSPPV EVPPPVPVYE
201: PPPKKEIPPP VPVYDPPPKK EVPPPVPVYK PPPKVELPPP IPKKPCPPKP PKIEHPPPVP VYKPPPKIEK PPPVPVYKPP PKIEHPPPVP VHKLPKKPCP
301: PKKVDPPPVP VHKPPTKKPC PPKKVDPPPV PVHKPPPKIV IPPPKIEHPP PVPVYKPPPK IEHPPIYIPP IVKKPCPPPV PIYKPPVVIP KKPCPPPVPV
401: YKPPVVVIPK KPCPPLPQLP PLPKFPPLPP KYIHHPKFGK WPPLPPHP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)