suba logo
AT4G38740.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : rotamase CYP 1
Curator
Summary (TAIR10)
Encodes cytosolic cyclophilin ROC1.
Computational
Description (TAIR10)
rotamase CYP 1 (ROC1); FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding, response to cadmium ion, signal transduction; LOCATED IN: cytosol, apoplast, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT2G21130.1); Has 16514 Blast hits to 16480 proteins in 2670 species: Archae - 108; Bacteria - 6825; Metazoa - 2927; Fungi - 1383; Plants - 1289; Viruses - 4; Other Eukaryotes - 3978 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G38740-MONOMERBioGrid:15309BRENDA:5.2.1.8EC:5.2.1.8eggNOG:COG0652eggNOG:KOG0865EMBL:AK226392
EMBL:AL035656EMBL:AL161593EMBL:AY088103EMBL:AY093227EMBL:BT003397EMBL:CP002687EMBL:L14844
EnsemblPlants:AT4G38740EnsemblPlants:AT4G38740.1entrez:830029Gene3D:2.40.100.10GeneID:830029Genevisible:P34790GO:GO:0001932
GO:GO:0003755GO:GO:0005829GO:GO:0005886GO:GO:0006457GO:GO:0007165GO:GO:0009416GO:GO:0009585
GO:GO:0009626GO:GO:0009704GO:GO:0009735GO:GO:0009742GO:GO:0009785GO:GO:0042277GO:GO:0046686
GO:GO:0048046Gramene:AT4G38740.1hmmpanther:PTHR11071hmmpanther:PTHR11071:SF252HOGENOM:HOG000065981InParanoid:P34790IntAct:P34790
InterPro:IPR002130InterPro:IPR020892InterPro:IPR024936InterPro:IPR029000iPTMnet:P34790KEGG:ath:AT4G38740KO:K01802
MINT:MINT-8061878OMA:ERRIPFYPANTHER:PTHR11071PaxDb:P34790Pfam:P34790Pfam:PF00160Pfscan:PS50072
PhylomeDB:P34790PIR:T06073PIRSF:PIRSF001467PRIDE:P34790PRINTS:PR00153PRO:PR:P34790PROSITE:PS00170
PROSITE:PS50072ProteinModelPortal:P34790Proteomes:UP000006548Reactome:R-ATH-6781823Reactome:R-ATH-6782135Reactome:R-ATH-6782210RefSeq:NP_195585.1
scanprosite:PS00170SMR:P34790STRING:3702.AT4G38740.1SUPFAM:SSF50891TAIR:AT4G38740tair10-symbols:ROC1UniGene:At.24097
UniGene:At.24759UniGene:At.71539UniGene:At.72496UniProt:P34790
Coordinates (TAIR10) chr4:-:18083620..18084138
Molecular Weight (calculated) 18373.90 Da
IEP (calculated) 7.97
GRAVY (calculated) -0.27
Length 172 amino acids
Sequence (TAIR10)
(BLAST)
001: MAFPKVYFDM TIDGQPAGRI VMELYTDKTP RTAENFRALC TGEKGVGGTG KPLHFKGSKF HRVIPNFMCQ GGDFTAGNGT GGESIYGSKF EDENFERKHT
101: GPGILSMANA GANTNGSQFF ICTVKTDWLD GKHVVFGQVV EGLDVVKAIE KVGSSSGKPT KPVVVADCGQ LS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)