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AT4G38710.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glycine-rich protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
glycine-rich protein; CONTAINS InterPro DOMAIN/s: Plant specific eukaryotic initiation factor 4B (InterPro:IPR010433); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 4B1 (TAIR:AT3G26400.1); Has 13357 Blast hits to 7743 proteins in 694 species: Archae - 46; Bacteria - 1331; Metazoa - 4294; Fungi - 1200; Plants - 649; Viruses - 189; Other Eukaryotes - 5648 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IWN5eggNOG:ENOG410YH0IEMBL:AL035540EMBL:AL161593
EMBL:AY062647EMBL:AY093255EMBL:CP002687EnsemblPlants:AT4G38710
EnsemblPlants:AT4G38710.1EnsemblPlants:AT4G38710.2entrez:830027ExpressionAtlas:Q9SZP8
GeneID:830027Genevisible:Q9SZP8GO:GO:0003743GO:GO:0005634
GO:GO:0042803hmmpanther:PTHR32091hmmpanther:PTHR32091:SF5HOGENOM:HOG000119031
IntAct:Q9SZP8InterPro:IPR010433iPTMnet:Q9SZP8KEGG:ath:AT4G38710
ncoils:CoilOMA:ADEVDSWPaxDb:Q9SZP8Pfam:PF06273
PhylomeDB:Q9SZP8PIR:T05699ProteinModelPortal:Q9SZP8Proteomes:UP000006548
RefSeq:NP_001190956.1RefSeq:NP_195583.1STRING:3702.AT4G38710.2TAIR:AT4G38710
UniGene:At.27475UniProt:Q9SZP8
Coordinates (TAIR10) chr4:-:18078141..18080002
Molecular Weight (calculated) 48989.70 Da
IEP (calculated) 4.79
GRAVY (calculated) -1.18
Length 452 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAAVSSVWA KPGAWALEAE EHEAELKQQP SPTNQKSSAE DSSDFPSLAA AATTKTKKKK GQTISLAEFA TYGTAKAKPA PQTERLTQAE LVALPTGPRE
101: RSAEELDRSK LGGGFRSYGG GRYGDESSSS RWGSSRVSED GERRGGGFNR DREPSRDSGP SRADEDDNWA AAKKPISGNG FERRERGSGG GFFESQSQSK
201: ADEVDSWVST KPSEPRRFVS SNGGGGDRFE KRGSFESLSR NRDSQYGGGG GSESDTWGRR REESGAANGS PPPSGGSRPR LVLQPRTLPV AVVEVVKPES
301: PVLVIVEKPK GANPFGNARP REEVLAEKGQ DWKEIDEKLE AEKLKDIAAA MEKPNEKSTG KMGFGLGNGR KDEERIERSW RKSTEHSEED AQEEEPAVEG
401: AKKEETEDKP AVEEAKKEET EGEQAVEEAK KEETGGEPAV EEAKKEETED KI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)