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AT4G38690.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : PLC-like phosphodiesterases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PLC-like phosphodiesterases superfamily protein; FUNCTIONS IN: phospholipase C activity, phosphoric diester hydrolase activity; INVOLVED IN: intracellular signaling pathway, N-terminal protein myristoylation, lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase C, phosphatidylinositol-specific , X domain (InterPro:IPR000909), PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946); BEST Arabidopsis thaliana protein match is: PLC-like phosphodiesterases superfamily protein (TAIR:AT4G34920.1); Has 888 Blast hits to 888 proteins in 280 species: Archae - 0; Bacteria - 676; Metazoa - 61; Fungi - 70; Plants - 52; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z30QeggNOG:KOG4306EMBL:AL035540EMBL:AL161593EMBL:AY070465EMBL:AY091668EMBL:CP002687
EnsemblPlants:AT4G38690EnsemblPlants:AT4G38690.1entrez:830025Gene3D:3.20.20.190GeneID:830025GO:GO:0006629GO:GO:0008081
Gramene:AT4G38690.1hmmpanther:PTHR13593hmmpanther:PTHR13593:SF35HOGENOM:HOG000243270IntAct:Q9SZP6InterPro:IPR000909InterPro:IPR017946
KEGG:ath:AT4G38690OMA:VCHGILKPfam:PF00388Pfscan:PS50007PhylomeDB:Q9SZP6PIR:T05697PROSITE:PS50007
Proteomes:UP000006548RefSeq:NP_195581.1SMART:SM00148SMR:Q9SZP6STRING:3702.AT4G38690.1SUPFAM:SSF51695TAIR:AT4G38690
UniGene:At.28046UniProt:Q9SZP6
Coordinates (TAIR10) chr4:-:18074743..18075699
Molecular Weight (calculated) 36291.70 Da
IEP (calculated) 8.21
GRAVY (calculated) -0.41
Length 318 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSHLSKQLE RRKAISTEKK ALTDLEKSCG CEFPGCDYMP SDRKNWMAGV GPEKLHINKI VWPGTHDSAT NKIGIRFVSR PFAKCQSLSI YNQLVAGTRV
101: LDIRVQEDRR VCHGILKTYS VDVVLADLKR FLSETESEIV ILEIRTEFGH EDPPEFDKYL VEQLGEHLIH QDDHVFSKTV AELLPKRVIC VWKPRKSPQP
201: KHGDPLWSAG YLKDNWIDTD LPSTKFESNI KHLSQQQPAT SRKFFYRVEN TVTPQPDNPI MCVKPVTKRI HCYAKVFIIE CVKRGCADKL QIFSTDFIDN
301: EFVDACVGLT FARAEGKA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)