suba logo
AT4G38590.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 0.688
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : beta-galactosidase 14
Curator
Summary (TAIR10)
putative beta-galactosidase (BGAL14 gene)
Computational
Description (TAIR10)
beta-galactosidase 14 (BGAL14); FUNCTIONS IN: cation binding, sugar binding, beta-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: nuclear mRNA splicing, via spliceosome, carbohydrate metabolic process; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35, conserved site (InterPro:IPR019801), Glycoside hydrolase, family 35 (InterPro:IPR001944), D-galactoside/L-rhamnose binding SUEL lectin (InterPro:IPR000922), Glycoside hydrolase, catalytic core (InterPro:IPR017853), PRP1 splicing factor, N-terminal (InterPro:IPR010491), Glycoside hydrolase family 2, carbohydrate-binding (InterPro:IPR006104), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 35 protein (TAIR:AT2G16730.1); Has 23317 Blast hits to 9736 proteins in 810 species: Archae - 62; Bacteria - 1372; Metazoa - 9840; Fungi - 2130; Plants - 1323; Viruses - 462; Other Eukaryotes - 8128 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2802-MONOMERCAZy:GH35EC:3.2.1.23eggNOG:COG1874
eggNOG:KOG0495eggNOG:KOG0496EMBL:AJ270310EMBL:AL035540
EMBL:AL161593EMBL:CP002687EnsemblPlants:AT4G38590EnsemblPlants:AT4G38590.1
entrez:830016Gene3D:2.60.120.260Gene3D:3.20.20.80GeneID:830016
Genevisible:Q9SCU8GO:GO:0004565GO:GO:0005975GO:GO:0030246
GO:GO:0048046Gramene:AT4G38590.1hmmpanther:PTHR23421hmmpanther:PTHR23421:SF52
HOGENOM:HOG000239919InParanoid:Q9SCU8InterPro:IPR000922InterPro:IPR001944
InterPro:IPR008979InterPro:IPR013781InterPro:IPR017853InterPro:IPR019801
InterPro:IPR031330KEGG:00052+3.2.1.23KEGG:00511+3.2.1.23KEGG:00531+3.2.1.23
KEGG:00600+3.2.1.23KEGG:00604+3.2.1.23ncoils:CoilPANTHER:PTHR23421
PaxDb:Q9SCU8Pfam:PF01301Pfam:PF02140Pfam:PF02837
Pfam:PF06424Pfam:Q9SCU8Pfscan:PS50228PhylomeDB:Q9SCU8
PIR:T05687PRIDE:Q9SCU8PRINTS:PR00742PRO:PR:Q9SCU8
PROSITE:PS01182PROSITE:PS50228ProteinModelPortal:Q9SCU8Proteomes:UP000006548
RefSeq:NP_195571.2scanprosite:PS01182SMR:Q9SCU8STRING:3702.AT4G38590.2
SUPFAM:SSF49785SUPFAM:SSF51445TAIR:AT4G38590tair10-symbols:BGAL14
UniGene:At.70242UniProt:Q9SCU8
Coordinates (TAIR10) chr4:+:18036395..18040928
Molecular Weight (calculated) 112107.00 Da
IEP (calculated) 6.56
GRAVY (calculated) -0.67
Length 988 amino acids
Sequence (TAIR10)
(BLAST)
001: MWPSIIDKAR IGGLNTIQTY VFWNVHEPEQ GKYDFKGRFD LVKFIKLIHE KGLYVTLRLG PFIQAEWNHG GLPYWLREVP DVYFRTNNEP FKEHTERYVR
101: KILGMMKEEK LFASQGGPII LGQIENEYNA VQLAYKENGE KYIKWAANLV ESMNLGIPWV MCKQNDAPGN LINACNGRHC GDTFPGPNRH DKPSLWTENW
201: TTQFRVFGDP PTQRTVEDIA FSVARYFSKN GSHVNYYMYH GGTNFGRTSA HFVTTRYYDD APLDEFGLEK APKYGHLKHV HRALRLCKKA LFWGQLRAQT
301: LGPDTEVRYY EQPGTKVCAA FLSNNNTRDT NTIKFKGQDY VLPSRSISIL PDCKTVVYNT AQIVAQHSWR DFVKSEKTSK GLKFEMFSEN IPSLLDGDSL
401: IPGELYYLTK DKTDYAWYTT SVKIDEDDFP DQKGLKTILR VASLGHALIV YVNGEYAGKA HGRHEMKSFE FAKPVNFKTG DNRISILGVL TGLPDSGSYM
501: EHRFAGPRAI SIIGLKSGTR DLTENNEWGH LAGLEGEKKE VYTEEGSKKV KWEKDGKRKP LTWYKTYFET PEGVNAVAIR MKAMGKGLIW VNGIGVGRYW
601: MSFLSPLGEP TQTEYHIPRS FMKGEKKKNM LVILEEEPGV KLESIDFVLV NRDTICSNVG EDYPVSVKSW KREGPKIVSR SKDMRLKAVM RCPPEKQMVE
701: VQFASFGDPT GTCGNFTMGK CSASKSKEVV EKECLGRNYC SIVVARETFG DKGCPEIVKT LAVQVKCEKK EGKQDEKKKK EDKDEEEEDD EDDDEEEEEE
801: DKENKDTKDM ENKNQDILDS DSALVSDLGF GPFSTVVVNV PLIGGAAPPQ PRFNLMPPSN YVAGLGRGAA GFTTRSDIGP ARANGDGNAD VNHKFDDFEG
901: HDAGLFANAE SDDQDKEADA IWDAIDRRMD SRRKDRREAK LKQEIENYRA SNPKVSGQFV DLTRKLHTLS EDEWDSIPEI GNYSHRLY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)