AT4G38560.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Arabidopsis phospholipase-like protein (PEARLI 4) family | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Arabidopsis phospholipase-like protein (PEARLI 4) family; CONTAINS InterPro DOMAIN/s: Phospholipase-like, arabidopsis (InterPro:IPR007942); BEST Arabidopsis thaliana protein match is: Arabidopsis phospholipase-like protein (PEARLI 4) family (TAIR:AT2G20960.1); Has 264 Blast hits to 246 proteins in 47 species: Archae - 11; Bacteria - 15; Metazoa - 37; Fungi - 3; Plants - 167; Viruses - 2; Other Eukaryotes - 29 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:18029275..18031191 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 58781.20 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.39 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.77 | ||||||||||||||||||||||||||||||||
| Length | 521 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSGIVHHDCP NSGNPYHECH DQCFKRISSG DVPKKEKKRF GFGKPACSKE TPLTSPVRVI AGNRSPLPSY YGKRMDESDE SPSFSSSDDS FNANLPTPRS 101: TLHGNETAPG INWLPMSPSF AVYCKKDCFS SRIDHREGEA PILDEMPSKT RLKTPLSPDT RPRKSEHRTR NQGPRSKTPE PRGSYLEPPR SRIPQTQPVP 201: HRSLESAGLK SPQKGETRPH IPQTQPTSFN IGGNYHYAAQ ASKYHANKAD SVYTKDRDKC VILYPDILLS PQENLTSRSI TMLPQKSRTP LDKQSKEPLQ 301: LPVECHSFTP SEIECMKALK IYETGEEMKS MISESYVSVG SYKVRASVSS TLQKILDKHG DIASGSKLQS LRTKSYSLET LAAVVLELQS TPLKKLKQAR 401: VLEMLSVVID AESVKIRAGW LREILNEILE AAHHYDGHET TVVEKEGRER DMLLEREEMK KIQEEVRLKE KEAKDFRKGV MEMAGRLGEL KMKRARLEKR 501: LAFLSSKVEK FEGESLLENV F |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)