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AT4G38560.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Arabidopsis phospholipase-like protein (PEARLI 4) family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Arabidopsis phospholipase-like protein (PEARLI 4) family; CONTAINS InterPro DOMAIN/s: Phospholipase-like, arabidopsis (InterPro:IPR007942); BEST Arabidopsis thaliana protein match is: Arabidopsis phospholipase-like protein (PEARLI 4) family (TAIR:AT2G20960.1); Has 264 Blast hits to 246 proteins in 47 species: Archae - 11; Bacteria - 15; Metazoa - 37; Fungi - 3; Plants - 167; Viruses - 2; Other Eukaryotes - 29 (source: NCBI BLink).
Protein Annotations
EMBL:AL035540EMBL:AL161593EMBL:BT023434EMBL:CP002687EnsemblPlants:AT4G38560EnsemblPlants:AT4G38560.1entrez:830013
ExpressionAtlas:Q9SZN5GeneID:830013GO:GO:0003682GO:GO:0007064GO:GO:0010468Gramene:AT4G38560.1hmmpanther:PTHR21704
HOGENOM:HOG000120704InterPro:IPR007942InterPro:IPR033031ncoils:CoilPANTHER:PTHR21704Pfam:PF05278PhylomeDB:Q9SZN5
PIR:T05684Proteomes:UP000006548RefSeq:NP_195568.1STRING:3702.AT4G38560.2TAIR:AT4G38560UniGene:At.48962UniGene:At.71025
UniProt:Q9SZN5
Coordinates (TAIR10) chr4:+:18029275..18031191
Molecular Weight (calculated) 58781.20 Da
IEP (calculated) 9.39
GRAVY (calculated) -0.77
Length 521 amino acids
Sequence (TAIR10)
(BLAST)
001: MSGIVHHDCP NSGNPYHECH DQCFKRISSG DVPKKEKKRF GFGKPACSKE TPLTSPVRVI AGNRSPLPSY YGKRMDESDE SPSFSSSDDS FNANLPTPRS
101: TLHGNETAPG INWLPMSPSF AVYCKKDCFS SRIDHREGEA PILDEMPSKT RLKTPLSPDT RPRKSEHRTR NQGPRSKTPE PRGSYLEPPR SRIPQTQPVP
201: HRSLESAGLK SPQKGETRPH IPQTQPTSFN IGGNYHYAAQ ASKYHANKAD SVYTKDRDKC VILYPDILLS PQENLTSRSI TMLPQKSRTP LDKQSKEPLQ
301: LPVECHSFTP SEIECMKALK IYETGEEMKS MISESYVSVG SYKVRASVSS TLQKILDKHG DIASGSKLQS LRTKSYSLET LAAVVLELQS TPLKKLKQAR
401: VLEMLSVVID AESVKIRAGW LREILNEILE AAHHYDGHET TVVEKEGRER DMLLEREEMK KIQEEVRLKE KEAKDFRKGV MEMAGRLGEL KMKRARLEKR
501: LAFLSSKVEK FEGESLLENV F
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)