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AT4G38550.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.988
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22215637 (2012): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:18686298 (2008): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Arabidopsis phospholipase-like protein (PEARLI 4) family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Arabidopsis phospholipase-like protein (PEARLI 4) family; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase-like, arabidopsis (InterPro:IPR007942); BEST Arabidopsis thaliana protein match is: Arabidopsis phospholipase-like protein (PEARLI 4) family (TAIR:AT2G20950.1); Has 2973 Blast hits to 2400 proteins in 345 species: Archae - 8; Bacteria - 147; Metazoa - 1113; Fungi - 821; Plants - 590; Viruses - 45; Other Eukaryotes - 249 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JUR9eggNOG:ENOG41106MPEMBL:AF360282EMBL:BT000695EMBL:BT001966EMBL:CP002687EnsemblPlants:AT4G38550
EnsemblPlants:AT4G38550.1entrez:830012GeneID:830012GO:GO:0003682GO:GO:0007064GO:GO:0010468Gramene:AT4G38550.1
hmmpanther:PTHR21704hmmpanther:PTHR21704:SF19IntAct:Q9C5F6InterPro:IPR007942InterPro:IPR033031KEGG:ath:AT4G38550ncoils:Coil
OMA:MYEPEANPANTHER:PTHR21704Pfam:PF05278PhylomeDB:Q9C5F6Proteomes:UP000006548RefSeq:NP_195567.2STRING:3702.AT4G38550.1
TAIR:AT4G38550UniGene:At.19022UniGene:At.74802UniProt:Q9C5F6
Coordinates (TAIR10) chr4:+:18025886..18028546
Molecular Weight (calculated) 69685.60 Da
IEP (calculated) 6.66
GRAVY (calculated) -1.10
Length 612 amino acids
Sequence (TAIR10)
(BLAST)
001: MDFFTSSKAK KDSKKSSGLF GKKTVSKSTP GSPAHPPGAR SPPPSYLSNK RAETEYDFPM SNEQRPYWKQ PASERVPNSH PRPPVYGYGT PDHRRDHGRE
101: RMEAMSYEPE TNAPSSPYHP AGNRTPERPR KSTEYRREHQ DRMYEADTRS NASPFHPFRS PSPSPFHTPD RRRDHYDMYE PEANTMLQNS APGSPFHPAG
201: SRSPPPYRTP DRRSNYDKEQ FEDLYEQDGD VTPRNSSPPS PFHPAAYKTS DQRSNHGKEQ IEDFYEQDDD VTPRNSSPPS PLHPAASHSP PPPQPYRTPD
301: HRRSHQDNED FEAMYELDGD LIHQKSAPPS PVHGPYYSSS DDDNHSTYLY PEIRSPLRSR IVSENSTPVH HNYQIVAAET YEQDKQFEPP ELPDESQSFT
401: MQEITKMRGL KNYESGKEES QSMISEAYVS VANYRVRQSV SETLQAIIDK HGDIAASSKL QAMATRSYYL ESLAAVVMEL KKTVLRDLTK TRVAEIAAVV
501: KDMESVKINV SWLKTAVTEL AEAVEYFGQY DTAKVEKEVC ERDLTAKKGE MEEMTAELVK REKEIKECRE KVTVVAGRLG QLEMKGSKLN KNLDLFQSKV
601: HKFQGEAVLL HL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)