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AT4G38520.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.617
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein phosphatase 2C family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT5G66080.1); Has 5534 Blast hits to 5531 proteins in 297 species: Archae - 0; Bacteria - 21; Metazoa - 1498; Fungi - 573; Plants - 2468; Viruses - 5; Other Eukaryotes - 969 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G38520-MONOMERBioCyc:ARA:GQT-2027-MONOMERBioGrid:15289EC:3.1.3.16eggNOG:COG0631eggNOG:KOG0700EMBL:AL035540
EMBL:AL161593EMBL:AY062454EMBL:BT020368EMBL:BT021094EMBL:CP002687EnsemblPlants:AT4G38520EnsemblPlants:AT4G38520.1
EnsemblPlants:AT4G38520.2entrez:830009Gene3D:3.60.40.10GeneID:830009Genevisible:Q5PNS9GO:GO:0004722GO:GO:0046872
Gramene:AT4G38520.1Gramene:AT4G38520.2hmmpanther:PTHR13832hmmpanther:PTHR13832:SF342HOGENOM:HOG000238703InParanoid:Q5PNS9IntAct:Q5PNS9
InterPro:IPR000222InterPro:IPR001932InterPro:IPR015655KEGG:ath:AT4G38520MINT:MINT-8390433OMA:CMSSEVIPANTHER:PTHR13832
PaxDb:Q5PNS9Pfam:PF00481Pfam:Q5PNS9Pfscan:PS51746PhylomeDB:Q5PNS9PIR:T05680PRIDE:Q5PNS9
PRO:PR:Q5PNS9PROSITE:PS01032PROSITE:PS51746ProteinModelPortal:Q5PNS9Proteomes:UP000006548RefSeq:NP_195564.2RefSeq:NP_974708.1
scanprosite:PS01032SMART:SM00332SMR:Q5PNS9STRING:3702.AT4G38520.1SUPFAM:SSF81606TAIR:AT4G38520UniGene:At.47543
UniProt:Q5PNS9
Coordinates (TAIR10) chr4:-:18015999..18017514
Molecular Weight (calculated) 44125.50 Da
IEP (calculated) 7.92
GRAVY (calculated) -0.25
Length 400 amino acids
Sequence (TAIR10)
(BLAST)
001: MLSGLMNFLN ACLWPRSDQQ ARSASDSGGR QEGLLWFRDS GQHVFGDFSM AVVQANSLLE DQSQLESGSL SSHDSGPFGT FVGVYDGHGG PETSRFINDH
101: MFHHLKRFTA EQQCMSSEVI KKAFQATEEG FLSIVTNQFQ TRPQIATVGS CCLVSVICDG KLYVANAGDS RAVLGQVMRV TGEAHATQLS AEHNASIESV
201: RRELQALHPD HPDIVVLKHN VWRVKGIIQV SRSIGDVYLK RSEFNREPLY AKFRLRSPFS KPLLSAEPAI TVHTLEPHDQ FIICASDGLW EHMSNQEAVD
301: IVQNHPRNGI AKRLVKVALQ EAAKKREMRY SDLKKIDRGV RRHFHDDITV IVVFFDTNLV SRGSMLRGPA VSVRGAGVNL PHNTLAPCTT PTQAAAAGAS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)