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AT4G38510.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
vacuole 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23390424 (2013): plastid plastid envelope
  • PMID:22923678 (2012): plant-type vacuole
  • PMID:22430844 (2012): Golgi
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15574830 (2004): plasma membrane
  • PMID:15539469 (2004): plant-type vacuole
  • PMID:15215502 (2004): plant-type vacuole
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ATPase, V1 complex, subunit B protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ATPase, V1 complex, subunit B protein; FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, proton-transporting ATPase activity, rotational mechanism, ATP binding; INVOLVED IN: proton transport, ATP metabolic process, ATP synthesis coupled proton transport; LOCATED IN: plasma membrane, vacuole, membrane, chloroplast envelope; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, alpha/beta subunit, nucleotide-binding domain, active site (InterPro:IPR020003), ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal (InterPro:IPR000793), ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal (InterPro:IPR004100), ATPase, alpha/beta subunit, nucleotide-binding domain (InterPro:IPR000194), ATPase, V1 complex, subunit B (InterPro:IPR005723); BEST Arabidopsis thaliana protein match is: ATPase, V1 complex, subunit B protein (TAIR:AT1G76030.1); Has 40414 Blast hits to 39266 proteins in 9675 species: Archae - 969; Bacteria - 20976; Metazoa - 1668; Fungi - 811; Plants - 8180; Viruses - 0; Other Eukaryotes - 7810 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G38510-MONOMERBioCyc:ARA:GQT-1527-MONOMERBioCyc:ARA:GQT-292-MONOMERBioCyc:ARA:GQT-293-MONOMERBioCyc:ARA:GQT-294-MONOMERBioGrid:15288eggNOG:COG1156
eggNOG:KOG1351EMBL:AK222158EMBL:AK317281EMBL:AK317596EMBL:AL035540EMBL:AL161593EMBL:AY039518
EMBL:AY045609EMBL:AY059167EMBL:AY090334EMBL:CP002687EnsemblPlants:AT4G38510EnsemblPlants:AT4G38510.1EnsemblPlants:AT4G38510.2
EnsemblPlants:AT4G38510.3EnsemblPlants:AT4G38510.4entrez:830008ExpressionAtlas:Q9SZN1Gene3D:3.40.50.300GeneID:830008Genevisible:Q9SZN1
GO:GO:0005524GO:GO:0005774GO:GO:0015991GO:GO:0016820GO:GO:0033180GO:GO:0046034HAMAP:MF_00310
hmmpanther:PTHR15184hmmpanther:PTHR15184:SF53HOGENOM:HOG000165320InParanoid:Q9SZN1IntAct:Q9SZN1InterPro:IPR000194InterPro:IPR004100
InterPro:IPR005723InterPro:IPR020003InterPro:IPR022879InterPro:IPR027417iPTMnet:Q9SZN1KEGG:00190+3.6.3.14KEGG:ath:AT4G38510
KO:K02147MINT:MINT-8061837PaxDb:Q9SZN1Pfam:PF00006Pfam:PF00306Pfam:PF02874Pfam:Q9SZN1
PhylomeDB:Q9SZN1PIR:T05679PIRSF:PIRSF039114PRIDE:Q9SZN1PRO:PR:Q9SZN1PROSITE:PS00152ProteinModelPortal:Q9SZN1
Proteomes:UP000006548Reactome:R-ATH-77387Reactome:R-ATH-917977RefSeq:NP_001031807.1RefSeq:NP_001031808.1RefSeq:NP_195563.1RefSeq:NP_974707.1
scanprosite:PS00152SMR:Q9SZN1STRING:3702.AT4G38510.5SUPFAM:SSF52540TAIR:AT4G38510TCDB:3.A.2.2.5TIGRfam:TIGR01040
TIGRFAMs:TIGR01040UniGene:At.48961UniGene:At.71095UniProt:Q9SZN1
Coordinates (TAIR10) chr4:-:18011155..18014789
Molecular Weight (calculated) 54308.00 Da
IEP (calculated) 4.78
GRAVY (calculated) -0.27
Length 487 amino acids
Sequence (TAIR10)
(BLAST)
001: MGAAENNLEM EGTLEIGMEY RTVSGVAGPL VILEKVKGPK YQEIVNIRLG DGTTRRGQVL EVDGEKAVVQ VFEGTSGIDN KYTTVQFTGE VLKTPVSLDM
101: LGRIFNGSGK PIDNGPPILP EAYLDISGSS INPSERTYPE EMIQTGISTI DVMNSIARGQ KIPLFSAAGL PHNEIAAQIC RQAGLVKRLE KSDNLLEHQE
201: DDNFAIVFAA MGVNMETAQF FKRDFEENGS MERVTLFLNL ANDPTIERII TPRIALTTAE YLAYECGKHV LVILTDMSSY ADALREVSAA REEVPGRRGY
301: PGYMYTDLAT IYERAGRIEG RKGSITQIPI LTMPNDDITH PTPDLTGYIT EGQIYIDRQL HNRQIYPPIN VLPSLSRLMK SAIGEGMTRR DHSDVSNQLY
401: ANYAIGKDVQ AMKAVVGEEA LSSEDLLYLE FLDKFERKFV AQGAYDTRNI FQSLDLAWTL LRIFPRELLH RIPAKTLDQF YSRDTTN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)