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AT4G38490.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 0.733
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J2YBeggNOG:ENOG410Y190EMBL:AY054627EMBL:AY072477
EMBL:CP002687EnsemblPlants:AT4G38490EnsemblPlants:AT4G38490.1entrez:830005
GeneID:830005GO:GO:0006605GO:GO:0009528GO:GO:0016021
GO:GO:0071806GO:GO:0090351Gramene:AT4G38490.1hmmpanther:PTHR37247
hmmpanther:PTHR37247:SF1HOGENOM:HOG000090554InterPro:IPR001901KEGG:ath:AT4G38490
OMA:SFMAEQPPfam:PF00584PhylomeDB:Q940H5Proteomes:UP000006548
RefSeq:NP_568043.1STRING:3702.AT4G38490.1TAIR:AT4G38490TMHMM:TMhelix
UniGene:At.26455UniGene:At.48960UniProt:Q940H5
Coordinates (TAIR10) chr4:+:18006385..18007203
Molecular Weight (calculated) 16725.60 Da
IEP (calculated) 10.32
GRAVY (calculated) 0.31
Length 153 amino acids
Sequence (TAIR10)
(BLAST)
001: MVVSPGLLST VSGVIRLAPS HRILRRDGFG PICFKFSGDL SINGRVSHKH VRGSGTVGSV GSARESWSSH KKLPEEEPLW LSLLRDMVWS TRSLLSFMAE
101: QPSQLKYIEW PTFASTLKTA TLSLCLVAVF IVALSSVDAA LCYILALILR KAP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)