AT4G38350.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Patched family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Patched family protein; FUNCTIONS IN: hedgehog receptor activity; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Niemann-Pick C type protein (InterPro:IPR004765), Patched (InterPro:IPR003392), Sterol-sensing 5TM box (InterPro:IPR000731); BEST Arabidopsis thaliana protein match is: Patched family protein (TAIR:AT1G42470.1); Has 3325 Blast hits to 2735 proteins in 472 species: Archae - 80; Bacteria - 454; Metazoa - 1756; Fungi - 181; Plants - 170; Viruses - 0; Other Eukaryotes - 684 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:17958324..17966846 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 139979.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.01 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.23 | ||||||||||||||||||||||||||||||||||||||||
| Length | 1273 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAIPTKLLLL QLFTFSLLLT ANLTHSEPSN NRHSKEYCAM YDICGHRSDG KVLNCPYASP SIQPDELFSA KIQSLCPTIS GNVCCTETQF DTLRSQVQQA 0101: VPFLVGCPAC LRNFLNLFCE LSCSPNQSLF INVTSVAEVS GNLTVDGIDY HITDTFGEGL YESCKEVKFG TMNTRAINFV GGGAKNFREW FTFIGQKAPS 0201: GFPGSPYAIN FKSSIPESSA MVPMNVSVYS CGDTSLGCSC GDCPSSPACS SPEPLPPHDE DSCSIRIGPL KVRCIELSMA LVYVLLVSCF FGWAGLNRRR 0301: NTTQPLDSSK PLLHPVEEDG INSEMKENIL GVKVQRHAQL SPVQRYMAKF YRSYGSWIAR NPSLVLFMSV AIVLALCSGL YNFKVETRPE KLWVGPESKA 0401: AEEKKFFDTH LSPFYRIEQL ILATVPDPKS GRAPSIVTDE NILLLFDIQQ KVDQIRGNYS GSEVSLPDIC LKPLGEDCAT QSILQYFKMD SGTFDDYGGV 0501: EHAEYCFQHY TSSETCLSAF QAPVDPSAVL GGFSGNNYSE ATAFVVTYPV NNVIGDSSNE NARAVAWEKS FIQLAKEELL PMVRSKNLSL SFSSESSIEE 0601: ELKRESTADV ITIAASYLVM FVYISVTLGD APQFYTFYIS SKVLLGLSGV VLVLLSVLGS VGVFSALGVK STLIIMEVIP FLVLAVGVDN MCILVHAVKR 0701: QPREVSLEQR ISSALVEVGP SITLASLSEV LAFAVGAFVP MPACRIFSMF AALAIMLDFF LQITAFVALI VFDCKRSADN RIDCFPCIKV PSSSRESVEG 0801: GREPGFLERY MKEVHAPVLG LWGVKMVVVA VFFAFALASI AISPRLETGL EQKIVLPRDS YLQDYFDSLS EYLRVGPPLY FVVKNYNYSS ESRHTNQLCS 0901: ISQCNSNSLL NEISRASQAS DTSYIAKPAA SWLDDFLVWL SPEAFGCCRK FTNGSYCPPD DQPPCCTAEE DICSLDGICK DCTTCFRHSD LVQDRPSTAQ 1001: FREKLPWFLN ALPSADCAKG GHGAYTNSVD LKGYESGVIQ ASEFRTYHTP LNTQGDYVNA LRAAREFSSR ISNSLKIDIF PYSVFYIFFE QYLNIWTVAL 1101: TNLAIAIGAI FIVCWLITSS AWSSAIIVLV LVMILVDLMG MMVILGIQLN AVSVVNLIMS IGIAVEFCVH ISHAFLMSSG DREHRAREAL ETMGASVFSG 1201: ITLTKLVGVI VLCFARSEIF VVYYFQMYLA LVIIGFLHGL VFLPVILSLA GPPQLNLDIE QQQTDEASSS LLN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)