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AT4G38210.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : expansin A20
Curator
Summary (TAIR10)
expansin -like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.
Computational
Description (TAIR10)
expansin A20 (EXPA20); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, response to karrikin, syncytium formation, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A9 (TAIR:AT5G02260.1); Has 2080 Blast hits to 2077 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 12; Plants - 2051; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IGIZeggNOG:ENOG410YAZEEMBL:AL035538EMBL:AL161593EMBL:AY087133EMBL:CP002687EnsemblPlants:AT4G38210
EnsemblPlants:AT4G38210.1entrez:829977Gene3D:2.40.40.10Gene3D:2.60.40.760GeneID:829977Genevisible:Q9SZM1GO:GO:0005576
GO:GO:0005618GO:GO:0006949GO:GO:0009664GO:GO:0016020GO:GO:0080167Gramene:AT4G38210.1hmmpanther:PTHR31867
hmmpanther:PTHR31867:SF7HOGENOM:HOG000220793InParanoid:Q9SZM1InterPro:IPR002963InterPro:IPR007112InterPro:IPR007117InterPro:IPR007118
InterPro:IPR009009KEGG:ath:AT4G38210OMA:SSDYGGWPaxDb:Q9SZM1Pfam:PF01357Pfam:PF03330Pfam:Q9SZM1
Pfscan:PS50842Pfscan:PS50843PhylomeDB:Q9SZM1PIR:T05648PRIDE:Q9SZM1PRINTS:PR01225PRINTS:PR01226
PRO:PR:Q9SZM1PROSITE:PS50842PROSITE:PS50843ProteinModelPortal:Q9SZM1Proteomes:UP000006548RefSeq:NP_195534.1SMART:SM00837
SMR:Q9SZM1STRING:3702.AT4G38210.1SUPFAM:SSF49590SUPFAM:SSF50685TAIR:AT4G38210tair10-symbols:ATEXP20tair10-symbols:ATEXPA20
tair10-symbols:ATHEXP ALPHA 1.23tair10-symbols:EXP20tair10-symbols:EXPA20UniGene:At.31190UniProt:Q9SZM1
Coordinates (TAIR10) chr4:-:17922975..17923821
Molecular Weight (calculated) 27858.10 Da
IEP (calculated) 8.41
GRAVY (calculated) -0.10
Length 256 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSGLQQLAL CLFFILCRLF QATAEDDWKI ATATLSRDRD GSSSVATGGA CGYGDLRQSS FAGYSAGLSG KLFNRGSSCG ACLEVRCVNH IRWCLQGSPS
101: VVVTATDFCP PNSGLSSDYG GWCNFPKEHL ELSHAAFTGI AETRAEMIPI QYRRVKCGRR GGLRFSLSGS SHFFQVLISN VGLDGEVVGV KVKGHTTAWI
201: PMARNWGQNW HSSLDLIGQS LSFEVTLKGG KTIASYDVAP PYWRFGMTYQ GKQFHS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)