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AT4G38160.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Mitochondrial transcription termination factor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
pigment defective 191 (pde191); CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G21710.1); Has 1644 Blast hits to 948 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 135; Fungi - 0; Plants - 1414; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink).
Protein Annotations
DNASU:829972eggNOG:ENOG410XT49eggNOG:KOG1267EMBL:AL035538
EMBL:AL161593EMBL:AY093769EMBL:BT000548EMBL:CP002687
EnsemblPlants:AT4G38160EnsemblPlants:AT4G38160.1entrez:829972ExpressionAtlas:Q9SZL6
GeneID:829972GO:GO:0003690GO:GO:0005739GO:GO:0006355
Gramene:AT4G38160.1hmmpanther:PTHR13068hmmpanther:PTHR13068:SF5HOGENOM:HOG000242903
InterPro:IPR003690Pfam:PF02536PhylomeDB:Q9SZL6PIR:T05643
Proteomes:UP000006548RefSeq:NP_195529.1SMART:SM00733SMR:Q9SZL6
STRING:3702.AT4G38160.3TAIR:AT4G38160tair10-symbols:pde191UniGene:At.20825
UniProt:Q9SZL6
Coordinates (TAIR10) chr4:+:17902412..17903413
Molecular Weight (calculated) 37890.60 Da
IEP (calculated) 9.34
GRAVY (calculated) -0.11
Length 333 amino acids
Sequence (TAIR10)
(BLAST)
001: MEVTNTSSIM WFFRDKGFDD PSIDKMLRKC KQLEKAQSDV ASENWDYLSN IVGIQERKLP YIVSRCPKIL TLRLDERLIP MVECLSSLGR NPREVASAIT
101: KFPPILSHSV EEKLCPLLAF FQALGVPETQ LGKMILFNPR LISYSIDTKL TVIVSFLASL GLDQDGMIGK VLVKNPFLMG YSVDKRLRPT TEFLKSSVGL
201: SEDGIKSVVM NFPQLLCRDV NKILKPNYDY LKECGFGDSQ IATMVTGYPQ ILIKSVKNSL QPRIRFLVQV MGRGMDEVAS YPEFFHHGLK KKVESRFKLV
301: KKNNIDCSLR EMLDCNTKKF HEKFGFSEVT ASF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)