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AT4G38150.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G03560.2); Has 35233 Blast hits to 8000 proteins in 207 species: Archae - 4; Bacteria - 10; Metazoa - 48; Fungi - 167; Plants - 34530; Viruses - 0; Other Eukaryotes - 474 (source: NCBI BLink).
Protein Annotations
BioGrid:15251eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AK119139EMBL:AL035538EMBL:AL161593EMBL:AY075695
EMBL:AY143852EMBL:CP002687EnsemblPlants:AT4G38150EnsemblPlants:AT4G38150.1EnsemblPlants:AT4G38150.2entrez:829971GeneID:829971
Genevisible:Q9SZL5Gramene:AT4G38150.1Gramene:AT4G38150.2hmmpanther:PTHR24015hmmpanther:PTHR24015:SF337HOGENOM:HOG000082883InParanoid:Q9SZL5
IntAct:Q9SZL5InterPro:IPR002885KEGG:ath:AT4G38150OMA:NQKGFAVPaxDb:Q9SZL5Pfam:PF01535Pfam:PF13041
Pfam:Q9SZL5Pfscan:PS51375PhylomeDB:Q9SZL5PIR:T05642PRIDE:Q9SZL5PRO:PR:Q9SZL5PROSITE:PS51375
ProteinModelPortal:Q9SZL5Proteomes:UP000006548RefSeq:NP_001031806.1RefSeq:NP_195528.1SMR:Q9SZL5STRING:3702.AT4G38150.1TAIR:AT4G38150
TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.31198UniProt:Q9SZL5
Coordinates (TAIR10) chr4:-:17901211..17902119
Molecular Weight (calculated) 33456.10 Da
IEP (calculated) 6.92
GRAVY (calculated) -0.47
Length 302 amino acids
Sequence (TAIR10)
(BLAST)
001: MVPSSKAVVF ARQMAKQIRV TTPSMSATRF LSTGDNGQVD EQQNPPEPLP NRPLRGERSS NSHREPPARQ AHNLGKSDTT LSDDGFLEQF KLGVNQDSRE
101: TPKPEQYPQE PLPPPEDSDE IFKKMKEGGL IPNAVAMLDG LCKDGLVQEA MKLFGLMRDK GTIPEVVIYT AVVEAFCKAH KIEDAKRIFR KMQNNGIAPN
201: AFSYGVLVQG LYNCNMLDDA VAFCSEMLES GHSPNVPTFV ELVDALCRVK GVEQAQSAID TLNQKGFAVN VKAVKEFMDK RAPFPSLAWE AIFKKKPTEK
301: PF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)