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AT4G38100.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J0XJeggNOG:ENOG4111UCMEMBL:AL035538EMBL:AL161592EMBL:AY086071EMBL:BT025771EMBL:CP002687
EnsemblPlants:AT4G38100EnsemblPlants:AT4G38100.1entrez:829966GeneID:829966Genevisible:Q8LDD3GO:GO:0009535GO:GO:0016021
Gramene:AT4G38100.1hmmpanther:PTHR33222hmmpanther:PTHR33222:SF2HOGENOM:HOG000239512InParanoid:Q8LDD3InterPro:IPR025564InterPro:IPR033344
KEGG:ath:AT4G38100OMA:ELCTRSTPANTHER:PTHR33222PaxDb:Q8LDD3Pfam:PF14159Pfam:Q8LDD3PhylomeDB:Q8LDD3
PIR:T05637PRIDE:Q8LDD3PRO:PR:Q8LDD3Proteomes:UP000006548RefSeq:NP_568035.1STRING:3702.AT4G38100.1TAIR:AT4G38100
TMHMM:TMhelixUniGene:At.31205UniGene:At.47991UniProt:Q8LDD3
Coordinates (TAIR10) chr4:-:17887033..17888177
Molecular Weight (calculated) 21356.40 Da
IEP (calculated) 4.81
GRAVY (calculated) -0.18
Length 193 amino acids
Sequence (TAIR10)
(BLAST)
001: MELCTRSTTI ITHLPASFNG HGYLAGKSVD RISLPLQRNV ASLVLQSRTL RCSRKFPGET VTEETSTGVN EFGVEDRDGV VVAAEEKNSN SEAPQAEDEE
101: TQALEFLNDI KLDSDKTYSI LLYGSGAIVA LYLTSAIVSS LEAIPLFPKL MEVVGLGYTL WFTTRYLLFK RNREELKTKV SEIKKQVLGS DSE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)