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AT4G38070.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: mitochondrion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G11940.1); Has 194780 Blast hits to 83936 proteins in 3334 species: Archae - 2743; Bacteria - 33979; Metazoa - 84944; Fungi - 15379; Plants - 11807; Viruses - 735; Other Eukaryotes - 45193 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IIFVeggNOG:ENOG410YG0KEMBL:AJ577587EMBL:AL035538
EMBL:AL161592EMBL:CP002687EnsemblPlants:AT4G38070EnsemblPlants:AT4G38070.1
entrez:829963ExpressionAtlas:P0CB23Genevisible:P0CB23Gramene:AT4G38070.1
hmmpanther:PTHR18937hmmpanther:PTHR18937:SF222InParanoid:P0CB23ncoils:Coil
PaxDb:P0CB23Pfam:P0CB23Pfam:P0CB24Pfam:P0CB25
Pfam:PF00010Pfscan:PS50888PIR:T05634PRO:PR:P0CB23
Proteomes:UP000006548SMR:P0CB25STRING:3702.AT4G38070.1TAIR:AT4G38062
UniGene:At.31207UniProt:P0CB23UniProt:P0CB24UniProt:P0CB25
Coordinates (TAIR10) chr4:+:17876535..17882569
Molecular Weight (calculated) 175048.00 Da
IEP (calculated) 5.30
GRAVY (calculated) -0.71
Length 1513 amino acids
Sequence (TAIR10)
(BLAST)
0001: MEKVYEELDE VKAVNEKLRI DYRNKTELLE NLKKVQNEQL IEIREARLVN EKHGFEIEEK SREIAELKRA NEELQRCLRE KDSVVKRVND VNDKLRANGE
0101: DKYREFEEEK RNMMSGLDEA SEKNIDLEQK NNVYRAEIEG LKGLLAVAET KRIEAEKTVK GMKEMRGRDD VVVKMEEEKS QVEEKLKWKK EQFKHLEEAY
0201: EKLKNLFKDS KKEWEEEKSK LLDEIYSLQT KLDSVTRISE DLQKKLQMCN GALTQEETRR KHLEIQVSEF KAKYEDAFAE CQDARTQLDD LAGKRDWEVA
0301: ELRQTLSMKD AYFKEMKYEN GKLEQENREL LGSLKELQEA TIQGSGNSAL SKLKNKFRNL ENIHKNCSAN LRSKEAEWSS QVEKMVEEIN DYKLQLQSKE
0401: AALKEVELEL ENCRSSTAKM RLQYEEISIM FLVLSRTVSE AQSRLANAKD KQIKDEKREG NCYSLLMEQL DQKNAALAKA QMEIKEERES VACLLKRIEM
0501: LDLFENQNIQ MQKEVERFKE MVEESSRFQT QMQEKMKEAE NDYEEKLLQV CDALDNTNID LVAEREKVVS LTRQIESLGT VKEKNLVMEK ETQEYKEMLE
0601: ESEKCRVLLE EQISQLESDS NENIRELCSK VDIAYAKLAE EVEKTASLVR KSESIDLNEE HRQRELDHYK EMLEESTKTQ LLLQEKVVDV ENDSKRKLAD
0701: VSEALEIANS ELSDKTSEVF QIEFQLWVWK SIAKRLKAEL EQNQNLRKRV EASLLEQVGV GEAIKQEKNE LVHKLKVISH ARSSDSEKKE SLMRDKDEML
0801: ESLQREVELL EQDSLRRELE DVVLAHMIGE RELQNEREIC ALQQKDQDLC EVKHELEGSL KSVSLLLQQK QNEVNMLRKT WEKLTARQIL TAVETESKKM
0901: MIIELEGEIS SLSQKLETSN ESVSCFRQEA TKSRAELETK QTELKEVTTQ MQEKLRTSEA EKTELVKEVA SLSTEKRNLL SFISEMEDGM LKLYDGDTKL
1001: MKTLERVTQC CDGFGKENNN GETIGSPRLA MKHEEDVVTE DREGASQNRT APDLKPIETC RKLLKSREFL SVRYIIQVNQ LLKSKRHDDD DQFEQVEAIC
1101: DLLIAAENRL PNGLKDYYGM IRANRFGPVL LEDFEKLTKL LDKKHNYFPF SQEAADKASL AWSLLSKPPI KAHYDLAISA FFGECSKVKR KIFIPKKQIE
1201: VVVISDDDDE EEFSCLKISL NRYYYYDYLL FVFIYIYIHN KFNIPSNVLL SPSLCVTMVL LHHVSLSHYQ NSSSLFSSSS ESILCLFLVL CVMQLEQGMR
1301: PISRCYNPTA YSTTMGRSFF AGAATSSKLF SRGFSVTKPK SKTESKEVAA KKHSDAERRR RLRINSQFAT LRTILPNLVK QDKASVLGET VRYFNELKKM
1401: VQDIPTTPSL EDNLRLDHCN NNRDLARVVF SCSDREGLMS EVAESMKAVK AKAVRAEIMT VGGRTKCALF VQGVNGNEGL VKLKKSLKLV VNGKSSSEAK
1501: NNNNGGSLLI QQQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)