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AT4G38060.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.992
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65480.1); Has 63 Blast hits to 63 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IX55eggNOG:ENOG411269MEMBL:AL035538EMBL:AL161592
EMBL:CP002687EnsemblPlants:AT4G38060EnsemblPlants:AT4G38060.1entrez:829962
ExpressionAtlas:Q9SZK6GeneID:829962Gramene:AT4G38060.1hmmpanther:PTHR34464
hmmpanther:PTHR34464:SF1HOGENOM:HOG000071068KEGG:ath:AT4G38060PhylomeDB:Q9SZK6
PIR:T05633Proteomes:UP000006548RefSeq:NP_195519.3TAIR:AT4G38060
UniGene:At.2743UniProt:Q9SZK6
Coordinates (TAIR10) chr4:-:17874002..17874379
Molecular Weight (calculated) 13746.10 Da
IEP (calculated) 4.91
GRAVY (calculated) -0.63
Length 125 amino acids
Sequence (TAIR10)
(BLAST)
001: MMKRPIPSWP WWLLGSRKEK ETEALKFPTK IARVNKRKEL ELESFGSSGS ESVDVVAGDG PEWSVGWTEP HGPDFQSDDE GNDGGFLVLV PCYRAVVEGS
101: SNNNNQLLSA VKNLPNGLPP GMNHP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)