AT4G38010.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR-like) superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR-like) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: SLOW GROWTH 1 (TAIR:AT2G22410.1); Has 36420 Blast hits to 13424 proteins in 196 species: Archae - 0; Bacteria - 4; Metazoa - 28; Fungi - 56; Plants - 35898; Viruses - 0; Other Eukaryotes - 434 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:17859582..17861261 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 62437.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.29 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.14 | ||||||||||||||||||||||||||||||||||||||||
| Length | 559 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MYLPEKSVLL ELISRCSSLR VFKQIQTQLI TRDLLRDDLI INKVVTFLGK SADFASYSSV ILHSIRSVLS SFSYNTLLSS YAVCDKPRVT IFAYKTFVSN 101: GFSPDMFTFP PVFKACGKFS GIREGKQIHG IVTKMGFYDD IYVQNSLVHF YGVCGESRNA CKVFGEMPVR DVVSWTGIIT GFTRTGLYKE ALDTFSKMDV 201: EPNLATYVCV LVSSGRVGCL SLGKGIHGLI LKRASLISLE TGNALIDMYV KCEQLSDAMR VFGELEKKDK VSWNSMISGL VHCERSKEAI DLFSLMQTSS 301: GIKPDGHILT SVLSACASLG AVDHGRWVHE YILTAGIKWD THIGTAIVDM YAKCGYIETA LEIFNGIRSK NVFTWNALLG GLAIHGHGLE SLRYFEEMVK 401: LGFKPNLVTF LAALNACCHT GLVDEGRRYF HKMKSREYNL FPKLEHYGCM IDLLCRAGLL DEALELVKAM PVKPDVRICG AILSACKNRG TLMELPKEIL 501: DSFLDIEFED SGVYVLLSNI FAANRRWDDV ARIRRLMKVK GISKVPGSSY IEKFMTLDQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)