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AT4G38010.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.968
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR-like) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR-like) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: SLOW GROWTH 1 (TAIR:AT2G22410.1); Has 36420 Blast hits to 13424 proteins in 196 species: Archae - 0; Bacteria - 4; Metazoa - 28; Fungi - 56; Plants - 35898; Viruses - 0; Other Eukaryotes - 434 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AL035538EMBL:AL161592EMBL:CP002687EnsemblPlants:AT4G38010EnsemblPlants:AT4G38010.1
entrez:829957GeneID:829957Genevisible:Q9SZK1Gramene:AT4G38010.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF266HOGENOM:HOG000237569
InParanoid:Q9SZK1InterPro:IPR002885KEGG:ath:AT4G38010OMA:KAMPMRPPaxDb:Q9SZK1Pfam:PF01535Pfam:PF12854
Pfam:PF13041Pfam:Q9SZK1Pfscan:PS51375PhylomeDB:Q9SZK1PIR:T05628PRIDE:Q9SZK1PRO:PR:Q9SZK1
PROSITE:PS51375ProteinModelPortal:Q9SZK1Proteomes:UP000006548RefSeq:NP_195514.1SMR:Q9SZK1STRING:3702.AT4G38010.1TAIR:AT4G38010
TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.65469UniProt:Q9SZK1
Coordinates (TAIR10) chr4:-:17859582..17861261
Molecular Weight (calculated) 62437.40 Da
IEP (calculated) 8.29
GRAVY (calculated) 0.14
Length 559 amino acids
Sequence (TAIR10)
(BLAST)
001: MYLPEKSVLL ELISRCSSLR VFKQIQTQLI TRDLLRDDLI INKVVTFLGK SADFASYSSV ILHSIRSVLS SFSYNTLLSS YAVCDKPRVT IFAYKTFVSN
101: GFSPDMFTFP PVFKACGKFS GIREGKQIHG IVTKMGFYDD IYVQNSLVHF YGVCGESRNA CKVFGEMPVR DVVSWTGIIT GFTRTGLYKE ALDTFSKMDV
201: EPNLATYVCV LVSSGRVGCL SLGKGIHGLI LKRASLISLE TGNALIDMYV KCEQLSDAMR VFGELEKKDK VSWNSMISGL VHCERSKEAI DLFSLMQTSS
301: GIKPDGHILT SVLSACASLG AVDHGRWVHE YILTAGIKWD THIGTAIVDM YAKCGYIETA LEIFNGIRSK NVFTWNALLG GLAIHGHGLE SLRYFEEMVK
401: LGFKPNLVTF LAALNACCHT GLVDEGRRYF HKMKSREYNL FPKLEHYGCM IDLLCRAGLL DEALELVKAM PVKPDVRICG AILSACKNRG TLMELPKEIL
501: DSFLDIEFED SGVYVLLSNI FAANRRWDDV ARIRRLMKVK GISKVPGSSY IEKFMTLDQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)