AT4G37950.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 ASURE: extracellular What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Rhamnogalacturonate lyase family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Rhamnogalacturonate lyase family protein; CONTAINS InterPro DOMAIN/s: Rhamnogalacturonate lyase (InterPro:IPR010325), Carbohydrate-binding-like fold (InterPro:IPR013784), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: Rhamnogalacturonate lyase family protein (TAIR:AT2G22620.1); Has 315 Blast hits to 298 proteins in 69 species: Archae - 0; Bacteria - 55; Metazoa - 0; Fungi - 92; Plants - 168; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:17844792..17849156 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 77336.50 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.78 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.32 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 678 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEYGAPGMKA GRRVLTPLFV LVFLLQGVHS QTSRNKFNIA KAGHKLASPP VTLKKVGDNQ VVVDNGIIDV TFSSPQGLIT RIKYNGLNNV LNDQIENRGY 101: WDVVWYKPGQ VSSTDYLVGT KFDIVNQTSE QIEISFSRTF SQRGSGIPLN VDKRYIIRRG VSGIYMYAVL ERLIGWPDVD MDQIRIVFKL NTTKFDFMAV 201: SDNRQKIMPF DTDRDITKGR ASPLAYKEAV HLINPQNHML KGQVDDKYMY SVENKDNKVH GWISSDQRIG FWMITPSDEF HACGPIKQDL TSHVGPTTLS 301: MFTSVHYAGK DMNTNYKSKE PWKKVFGPVF VYLNSASSRN LLWTDAKRQM VSEVQSWPYD FVKSVDYPLH HQRGTVKGQL FVIDRYIKNV TYLFGQFAFV 401: GLALPGEAGS WQTENKGYQF WTRADKMGMF TIANVRPGTY SLYAWVSGFI GDYKYVRDIT ITPGREIDVG HIVYVPPRNG PTLWEIGQPD RTAAEFYIPD 501: PDPTLFTKLY LNYSNPQDRF RQYGLWDRYS VLYPRNDLVF TAGVSDYKKD WFYAHVNRKA GNGTYKATTW QIKFNLKAVI QTRIYTLRIA LAAASTIDLL 601: VWVNEVDSKP LFITGLIGRD NAIARHGIHG LYKLYNIDVH GKLLRVGNNT IFLTHGRNSD SFSGVMYDYL RLEGPSGV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)