suba logo
AT4G37940.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : AGAMOUS-like 21
Curator
Summary (TAIR10)
encodes a MADS box protein, highly expressed in the root.
Computational
Description (TAIR10)
AGAMOUS-like 21 (AGL21); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, C globular stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 17 (TAIR:AT2G22630.1); Has 7243 Blast hits to 7239 proteins in 914 species: Archae - 0; Bacteria - 6; Metazoa - 648; Fungi - 305; Plants - 6180; Viruses - 2; Other Eukaryotes - 102 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5068eggNOG:KOG0014EMBL:BT024846EnsemblPlants:AT4G37940EnsemblPlants:AT4G37940.1entrez:829950ExpressionAtlas:Q29PR0
GeneID:829950GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351Gramene:AT4G37940.1hmmpanther:PTHR11945
hmmpanther:PTHR11945:SF144InterPro:IPR002100InterPro:IPR002487KEGG:ath:AT4G37940ncoils:CoilOMA:QPEHSDYPaxDb:Q29PR0
Pfam:PF00319Pfam:PF01486Pfam:Q9SZJ6Pfscan:PS50066Pfscan:PS51297PhylomeDB:Q29PR0PRINTS:PR00404
PROSITE:PS00350PROSITE:PS50066PROSITE:PS51297ProteinModelPortal:Q29PR0RefSeq:NP_195507.1scanprosite:PS00350SMART:SM00432
SMR:Q29PR0STRING:3702.AT4G37940.1SUPFAM:SSF55455TAIR:AT4G37940tair10-symbols:AGL21UniGene:At.28801UniProt:Q29PR0
UniProt:Q9SZJ6
Coordinates (TAIR10) chr4:-:17835695..17838621
Molecular Weight (calculated) 26412.50 Da
IEP (calculated) 9.34
GRAVY (calculated) -0.75
Length 228 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRGKIVIQR IDDSTSRQVT FSKRRKGLIK KAKELAILCD AEVGLIIFSS TGKLYDFASS SMKSVIDRYN KSKIEQQQLL NPASEVKFWQ REAAVLRQEL
101: HALQENHRQM MGEQLNGLSV NELNSLENQI EISLRGIRMR KEQLLTQEIQ ELSQKRNLIH QENLDLSRKV QRIHQENVEL YKKAYMANTN GFTHREVAVA
201: DDESHTQIRL QLSQPEHSDY DTPPRANE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)