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AT4G37890.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.997
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Zinc finger (C3HC4-type RING finger) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
embryo sac development arrest 40 (EDA40); FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; INVOLVED IN: polar nucleus fusion; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: Zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G22680.1); Has 927 Blast hits to 854 proteins in 205 species: Archae - 0; Bacteria - 269; Metazoa - 39; Fungi - 123; Plants - 345; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2304eggNOG:ENOG410IEK7EMBL:CP002687EnsemblPlants:AT4G37890EnsemblPlants:AT4G37890.1entrez:829945ExpressionAtlas:F4JSV3
Gene3D:3.30.40.10Gene3D:3.40.50.410GeneID:829945GO:GO:0005886GO:GO:0008270GO:GO:0009506GO:GO:0010197
Gramene:AT4G37890.1hmmpanther:PTHR10579hmmpanther:PTHR10579:SF59InParanoid:F4JSV3InterPro:IPR001841InterPro:IPR002035InterPro:IPR013083
KEGG:ath:AT4G37890OMA:LEIPTHTPaxDb:F4JSV3Pfam:PF00092Pfam:PF17123Pfscan:PS50089PRIDE:F4JSV3
PROSITE:PS50089ProteinModelPortal:F4JSV3Proteomes:UP000006548RefSeq:NP_195502.2SMART:SM00184SMART:SM00327SMR:F4JSV3
STRING:3702.AT4G37890.1SUPFAM:SSF53300SUPFAM:SSF57850TAIR:AT4G37890tair10-symbols:EDA40UniGene:At.31220UniGene:At.49769
UniProt:F4JSV3
Coordinates (TAIR10) chr4:-:17812812..17815031
Molecular Weight (calculated) 81483.70 Da
IEP (calculated) 10.12
GRAVY (calculated) -0.46
Length 739 amino acids
Sequence (TAIR10)
(BLAST)
001: MMNGLRRTFW SSIHKKKDNN RVDDSLDRQK PTTTSRFGFF SNPSTPRSET RPDSVTCSPT IPCQSWSATA ISTPSPSLPA SPKLQCDTSG DVTPTRNRSP
101: LSFLSVSSSS STPSSPKSPA SFSLLKSKLC FTKVRILNRN NQVNIFKNNS KLTFLRLCYE QSSISSSKCG ICLQSAKAGR GTAIFTAECS HTFHFPCVAS
201: RAGDRNLLSD CPVCGASWRE TSLLPLSLSS SLHESGSESD SKIRESKNNN KSLRVYNDDE PLISSPISRT GFNTIPESNE DEEEEDNDDG EFKGFYVNTP
301: SPLTTKKMLT DSVTGHVDVK LSSEAAIVAV GRGNETYSVL MKIKSPSLPT ARRSPVDLVT VIDVSGGNIE MVKRAMRQVI SSLRETDRLS MVSFSSSSKR
401: LTPLRRMTAN GRRLARRIVD DISGDGDGMS VNDAVKKAAK VIEDRRQKNL FTTIFVLTDR NRNSAHQAQL AQPDFVTSTR FSHLEIPTHT IWLGACNHAL
501: PEDVFAKRIK SLLSLSVQDL TLNLGLVSGS GQGKVTSVYS LSGRPVWLGS GLIRLGDMYG DEEREVLVEL KSPSSSRSQR IMTVRSRHVD PTTQEIKNYE
601: DRALMIPRPT TVRSSDPSIA RLRNLHVSTR AVAESRRLVE VNDYSGAERM LTSARALLVQ YGLSSSDSCL RGLEAELADL NRLRGRHVAV KSPEPVVQKS
701: EPLTPTSAWR AAERLAKVAI MRKHMNRVSD LHGFENARF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)