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AT4G37870.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
  • PMID:15496452 (2005): nucleus
  • PMID:15157177 (2004): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : phosphoenolpyruvate carboxykinase 1
Curator
Summary (TAIR10)
Encodes a putative phosphoenolpyruvate carboxykinase (ATP-dependent).
Computational
Description (TAIR10)
phosphoenolpyruvate carboxykinase 1 (PCK1); FUNCTIONS IN: phosphoenolpyruvate carboxykinase activity, purine nucleotide binding, phosphoenolpyruvate carboxykinase (ATP) activity, ATP binding; INVOLVED IN: defense response to fungus, incompatible interaction, response to cadmium ion, cellular response to phosphate starvation, gluconeogenesis; LOCATED IN: cytosol, nucleolus, nucleus, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoenolpyruvate carboxykinase, N-terminal (InterPro:IPR008210), Phosphoenolpyruvate carboxykinase (ATP), conserved site (InterPro:IPR015994), Phosphoenolpyruvate carboxykinase, ATP-utilising (InterPro:IPR001272), Phosphoenolpyruvate carboxykinase, C-terminal (InterPro:IPR013035); BEST Arabidopsis thaliana protein match is: phosphoenolpyruvate carboxykinase 2 (TAIR:AT5G65690.1); Has 4504 Blast hits to 4501 proteins in 1411 species: Archae - 21; Bacteria - 2559; Metazoa - 2; Fungi - 139; Plants - 194; Viruses - 0; Other Eukaryotes - 1589 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1866eggNOG:ENOG410IE0YEMBL:AF372922EMBL:AK226329EnsemblPlants:AT4G37870EnsemblPlants:AT4G37870.1entrez:829943
ExpressionAtlas:Q0WWL8Gene3D:3.40.449.10Gene3D:3.90.228.20GeneID:829943GO:GO:0004612GO:GO:0005524GO:GO:0006094
GO:GO:0016301Gramene:AT4G37870.1gramene_pathway:4.1.1.49gramene_pathway:PWY-561gramene_pathway:PWYQT-4428HAMAP:MF_00453hmmpanther:PTHR30031
hmmpanther:PTHR30031:SF4InterPro:IPR001272InterPro:IPR008210InterPro:IPR013035InterPro:IPR015994iPTMnet:Q0WWL8KEGG:00010+4.1.1.49
KEGG:00020+4.1.1.49KEGG:00620+4.1.1.49KEGG:00710+4.1.1.49KEGG:ath:AT4G37870KO:K01610OMA:LLIAHETPaxDb:Q0WWL8
Pfam:PF01293Pfam:Q9T074PhylomeDB:Q0WWL8PRIDE:Q0WWL8PROSITE:PS00532ProteinModelPortal:Q0WWL8RefSeq:NP_195500.1
scanprosite:PS00532SMR:Q0WWL8STRING:3702.AT4G37870.1SUPFAM:SSF53795SUPFAM:SSF68923TAIR:AT4G37870tair10-symbols:PCK1
tair10-symbols:PEPCKTIGRfam:TIGR00224TIGRFAMs:TIGR00224UniGene:At.22897unipathway:UPA00138UniProt:Q0WWL8UniProt:Q9T074
Coordinates (TAIR10) chr4:-:17802974..17806332
Molecular Weight (calculated) 73409.10 Da
IEP (calculated) 7.08
GRAVY (calculated) -0.32
Length 671 amino acids
Sequence (TAIR10)
(BLAST)
001: MSAGNGNATN GDGGFSFPKG PVMPKITTGA AKRGSGVCHD DSGPTVNATT IDELHSLQKK RSAPTTPINQ NAAAAFAAVS EEERQKIQLQ SISASLASLT
101: RESGPKVVRG DPAEKKTDGS TTPAYAHGQH HSIFSPATGA VSDSSLKFTH VLYNLSPAEL YEQAIKYEKG SFITSNGALA TLSGAKTGRA PRDKRVVRDA
201: TTEDELWWGK GSPNIEMDEH TFMVNRERAV DYLNSLEKVF VNDQYLNWDP ENRIKVRIVS ARAYHSLFMH NMCIRPTQEE LESFGTPDFT IYNAGQFPCN
301: RYTHYMTSST SVDLNLARRE MVILGTQYAG EMKKGLFSVM HYLMPKRRIL SLHSGCNMGK DGDVALFFGL SGTGKTTLST DHNRYLIGDD EHCWTETGVS
401: NIEGGCYAKC VDLSREKEPD IWNAIKFGTV LENVVFDEHT REVDYSDKSV TENTRAAYPI EFIPNAKIPC VGPHPTNVIL LACDAFGVLP PVSKLNLAQT
501: MYHFISGYTA LVAGTEDGIK EPTATFSACF GAAFIMLHPT KYAAMLAEKM KSQGATGWLV NTGWSGGSYG VGNRIKLAYT RKIIDAIHSG SLLKANYKKT
601: EIFGFEIPTE IEGIPSEILD PVNSWSDKKA HKDTLVKLGG LFKKNFEVFA NHKIGVDGKL TEEILAAGPI F
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)