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AT4G37800.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:24393051 (2015): extracellular region
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : xyloglucan endotransglucosylase/hydrolase 7
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
xyloglucan endotransglucosylase/hydrolase 7 (XTH7); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, cell wall, apoplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757), Glycoside hydrolase, family 16, active site (InterPro:IPR008263); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 6 (TAIR:AT5G65730.1); Has 2144 Blast hits to 2126 proteins in 283 species: Archae - 0; Bacteria - 226; Metazoa - 0; Fungi - 448; Plants - 1383; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G37800-MONOMERBioGrid:15217CAZy:GH16EC:2.4.1.207eggNOG:COG2273eggNOG:ENOG410IKHWEMBL:AL035709
EMBL:AL161592EMBL:AY085282EMBL:AY093025EMBL:AY128926EMBL:CP002687EnsemblPlants:AT4G37800EnsemblPlants:AT4G37800.1
entrez:829936Gene3D:2.60.120.200GeneID:829936Genevisible:Q8LER3GO:GO:0004553GO:GO:0005618GO:GO:0010411
GO:GO:0016762GO:GO:0042546GO:GO:0048046GO:GO:0071555Gramene:AT4G37800.1hmmpanther:PTHR31062hmmpanther:PTHR31062:SF27
HOGENOM:HOG000236368InParanoid:Q8LER3InterPro:IPR000757InterPro:IPR008263InterPro:IPR010713InterPro:IPR013320InterPro:IPR016455
KEGG:ath:AT4G37800KO:K08235OMA:THITQIDPaxDb:Q8LER3Pfam:PF00722Pfam:PF06955Pfam:Q8LER3
Pfscan:PS51762PhylomeDB:Q8LER3PIR:T06027PIRSF:PIRSF005604PRIDE:Q8LER3PRO:PR:Q8LER3PROSITE:PS01034
PROSITE:PS51762ProteinModelPortal:Q8LER3Proteomes:UP000006548RefSeq:NP_195494.1scanprosite:PS01034SMR:Q8LER3STRING:3702.AT4G37800.1
SUPFAM:SSF49899TAIR:AT4G37800tair10-symbols:XTH7UniGene:At.42942UniProt:Q8LER3
Coordinates (TAIR10) chr4:-:17775703..17777372
Molecular Weight (calculated) 33682.60 Da
IEP (calculated) 7.46
GRAVY (calculated) -0.44
Length 293 amino acids
Sequence (TAIR10)
(BLAST)
001: MVVSLFSSRN VFYTLSLCLF AALYQPVMSR PAKFEDDFRI AWSDTHITQI DGGRAIQLKL DPSSGCGFAS KKQYLFGRVS MKIKLIPGDS AGTVTAFYMN
101: SDTDSVRDEL DFEFLGNRSG QPYTVQTNVF AHGKGDREQR VNLWFDPSRD FHEYAISWNH LRIVFYVDNV PIRVYKNNEA RKVPYPRFQP MGVYSTLWEA
201: DDWATRGGIE KINWSRAPFY AYYKDFDIEG CPVPGPADCP ANSKNWWEGS AYHQLSPVEA RSYRWVRVNH MVYDYCTDKS RFPVPPPECS AGI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)