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AT4G37760.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.959
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : squalene epoxidase 3
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
squalene epoxidase 3 (SQE3); FUNCTIONS IN: squalene monooxygenase activity; INVOLVED IN: response to jasmonic acid stimulus, response to wounding, sterol biosynthetic process; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Squalene epoxidase (InterPro:IPR013698), Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal (InterPro:IPR003953); BEST Arabidopsis thaliana protein match is: squalene epoxidase 2 (TAIR:AT2G22830.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BRENDA:1.14.13.132EC:1.14.14.17eggNOG:COG0654eggNOG:KOG1298EMBL:AK226847EMBL:AL035709EMBL:AL161592
EMBL:AY072019EMBL:BT001057EMBL:CP002687EnsemblPlants:AT4G37760EnsemblPlants:AT4G37760.1entrez:829932Gene3D:3.50.50.60
GeneID:829932Genevisible:Q8VYH2GO:GO:0004506GO:GO:0009611GO:GO:0009753GO:GO:0016021GO:GO:0016126
GO:GO:0050660Gramene:AT4G37760.1gramene_pathway:1.14.99.7gramene_pathway:PWY-5670hmmpanther:PTHR10835hmmpanther:PTHR10835:SF1HOGENOM:HOG000174713
InParanoid:Q8VYH2InterPro:IPR013698InterPro:IPR023753KEGG:ath:AT4G37760KO:K00511OMA:IGAAACTPaxDb:Q8VYH2
Pfam:PF08491Pfam:PF13450Pfam:Q8VYH2PhylomeDB:Q8VYH2PIR:T06023PRIDE:Q8VYH2PRO:PR:Q8VYH2
ProteinModelPortal:Q8VYH2Proteomes:UP000006548Reactome:R-ATH-191273Reactome:R-ATH-2426168RefSeq:NP_568033.1SMR:Q8VYH2STRING:3702.AT4G37760.1
SUPFAM:SSF51905TAIR:AT4G37760tair10-symbols:SQE3TMHMM:TMhelixUniGene:At.28165UniPathway:UPA00767UniProt:Q8VYH2
Coordinates (TAIR10) chr4:+:17744085..17746426
Molecular Weight (calculated) 57102.00 Da
IEP (calculated) 9.32
GRAVY (calculated) 0.13
Length 525 amino acids
Sequence (TAIR10)
(BLAST)
001: MAPTIFVDHC ILTTTFVASL FAFLLLYVLR RRSKTIHGSV NVRNGTLTVK SGTDVDIIIV GAGVAGAALA HTLGKEGRRV HVIERDLTEP DRIVGELLQP
101: GGYLKLIELG LEDCVKDIDA QRVLGYALFK DGKHTKLSYP LDQFDSDVAG RSFHNGRFVQ RMREKASLLP NVRMEQGTVT SLVEENGIIK GVQYKTKDGQ
201: ELKSFAPLTI VCDGCFSNLR RSLCKPKVEV PSNFVGLVLE NCELPFPNHG HVVLGDPSPI LFYPISSSEV RCLVDVPGSK LPSVASGEMA HHLKTMVAPQ
301: VPPQIRDAFI SAVEKGNIRT MPNRSMPADP IHTPGALLLG DAFNMRHPLT GGGMTVALSD IVILRDLLNP LVDLTNKESL SKYIESFYTL RKPVASTINT
401: LAGALYKVFL ASPDDARSEM RRACFDYLSL GGVCSSGPVA LLSGLNPRPM SLVLHFFAVA IFGVGRLLVP LPSVKRLWLG ARLISSASGI IFPIIKAEGV
501: RQMFFPRTIP AIYRAPPTPS SSSPQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)