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AT4G37660.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, large ribosomal subunit; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L12, chloroplast (InterPro:IPR015608), Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (InterPro:IPR014719), Ribosomal protein L7/L12, C-terminal (InterPro:IPR013823); BEST Arabidopsis thaliana protein match is: Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (TAIR:AT1G70190.2); Has 8368 Blast hits to 8368 proteins in 2737 species: Archae - 0; Bacteria - 5618; Metazoa - 193; Fungi - 132; Plants - 255; Viruses - 0; Other Eukaryotes - 2170 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0222eggNOG:KOG1715EMBL:AL035605EMBL:AL161591
EMBL:AY074583EMBL:AY088083EMBL:AY094012EMBL:CP002687
EnsemblPlants:AT4G37660EnsemblPlants:AT4G37660.1entrez:829920Gene3D:3.30.1390.10
GeneID:829920GO:GO:0003735GO:GO:0005840GO:GO:0006412
GO:GO:0008233Gramene:AT4G37660.1HAMAP:MF_00368hmmpanther:PTHR24089
hmmpanther:PTHR24089:SF375HOGENOM:HOG000248814InterPro:IPR000206InterPro:IPR013823
InterPro:IPR014719KEGG:ath:AT4G37660KO:K02935OMA:ILFRHKM
Pfam:PF00542PhylomeDB:Q9SZF8PIR:T04723ProDom:PD001326
Proteomes:UP000006548RefSeq:NP_195481.1SMR:Q9SZF8STRING:3702.AT4G37660.1
SUPFAM:SSF54736TAIR:AT4G37660UniGene:At.31233UniGene:At.31234
UniProt:Q9SZF8
Coordinates (TAIR10) chr4:+:17695543..17696046
Molecular Weight (calculated) 18220.20 Da
IEP (calculated) 10.08
GRAVY (calculated) -0.10
Length 167 amino acids
Sequence (TAIR10)
(BLAST)
001: MRAPISGIFS RSLGYLHRTT PLSSATRHLC AVASPEARTK KLERIADDLL KLNRIELYDY SLLFSHKIGL NRYGSAVAVT GSVGDASAST ETKTAEKTTF
101: DVKLEKFEAA SKIKVIKEIR AFTDLGLKEA KALVEKAPVI VKNGLTKEEA EKIMEKLKAV GAIVALE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)