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AT4G37650.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : GRAS family transcription factor
Curator
Summary (TAIR10)
Involved in radial organization of the root and shoot axial organs. Essential for normal shoot gravitropism. The protein moves in a highly specific manner from the cells of the stele in which it is synthesized outward. Movement requires sequences within the GRAS and VHIID domains.
Computational
Description (TAIR10)
SHORT ROOT (SHR); CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT3G49950.1); Has 2470 Blast hits to 2429 proteins in 304 species: Archae - 0; Bacteria - 4; Metazoa - 9; Fungi - 15; Plants - 2427; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
Protein Annotations
BioGrid:15200eggNOG:ENOG410IHJWeggNOG:ENOG41116YREMBL:AF233752EMBL:AL035605EMBL:AL161591EMBL:AY074547
EMBL:BT033026EMBL:CP002687EnsemblPlants:AT4G37650EnsemblPlants:AT4G37650.1entrez:829919GeneID:829919Genevisible:Q9SZF7
GO:GO:0003700GO:GO:0005634GO:GO:0005769GO:GO:0005770GO:GO:0006351GO:GO:0008356GO:GO:0009956
GO:GO:0032350GO:GO:0043565GO:GO:0045930GO:GO:0048366GO:GO:0055037GO:GO:0055072Gramene:AT4G37650.1
hmmpanther:PTHR31636hmmpanther:PTHR31636:SF9HOGENOM:HOG000078767InParanoid:Q9SZF7IntAct:Q9SZF7InterPro:IPR005202InterPro:IPR030019
KEGG:ath:AT4G37650OMA:TASHRMMPANTHER:PTHR31636:SF9PaxDb:Q9SZF7Pfam:PF03514Pfam:Q9SZF7Pfscan:PS50985
PhylomeDB:Q9SZF7PIR:T04722PRIDE:Q9SZF7PRO:PR:Q9SZF7PROSITE:PS50985Proteomes:UP000006548RefSeq:NP_195480.1
STRING:3702.AT4G37650.1TAIR:AT4G37650tair10-symbols:SGR7tair10-symbols:SHRUniGene:At.2816UniGene:At.71893UniProt:Q9SZF7
Coordinates (TAIR10) chr4:+:17691871..17693466
Molecular Weight (calculated) 59465.20 Da
IEP (calculated) 5.47
GRAVY (calculated) -0.42
Length 531 amino acids
Sequence (TAIR10)
(BLAST)
001: MDTLFRLVSL QQQQQSDSII TNQSSLSRTS TTTTGSPQTA YHYNFPQNDV VEECFNFFMD EEDLSSSSSH HNHHNHNNPN TYYSPFTTPT QYHPATSSTP
101: SSTAAAAALA SPYSSSGHHN DPSAFSIPQT PPSFDFSANA KWADSVLLEA ARAFSDKDTA RAQQILWTLN ELSSPYGDTE QKLASYFLQA LFNRMTGSGE
201: RCYRTMVTAA ATEKTCSFES TRKTVLKFQE VSPWATFGHV AANGAILEAV DGEAKIHIVD ISSTFCTQWP TLLEALATRS DDTPHLRLTT VVVANKFVND
301: QTASHRMMKE IGNRMEKFAR LMGVPFKFNI IHHVGDLSEF DLNELDVKPD EVLAINCVGA MHGIASRGSP RDAVISSFRR LRPRIVTVVE EEADLVGEEE
401: GGFDDEFLRG FGECLRWFRV CFESWEESFP RTSNERLMLE RAAGRAIVDL VACEPSDSTE RRETARKWSR RMRNSGFGAV GYSDEVADDV RALLRRYKEG
501: VWSMVQCPDA AGIFLCWRDQ PVVWASAWRP T
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)