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AT4G37510.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid
  • PMID:20423899 (2010): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribonuclease III family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribonuclease III family protein; FUNCTIONS IN: RNA binding, ribonuclease III activity; INVOLVED IN: RNA processing; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease III (InterPro:IPR000999); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G48121.2); Has 794 Blast hits to 789 proteins in 319 species: Archae - 0; Bacteria - 574; Metazoa - 0; Fungi - 39; Plants - 42; Viruses - 0; Other Eukaryotes - 139 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1385-MONOMEReggNOG:ENOG410IJP5eggNOG:ENOG4110321EMBL:AL035601EMBL:AL161591EMBL:BT025333EMBL:CP002687
EnsemblPlants:AT4G37510EnsemblPlants:AT4G37510.1entrez:10723072entrez:829906Gene3D:1.10.1520.10GeneID:829906GO:GO:0003723
GO:GO:0004525GO:GO:0006397GO:GO:0008380GO:GO:0009507GO:GO:0030529Gramene:AT4G37510.1hmmpanther:PTHR11207
hmmpanther:PTHR11207:SF4HOGENOM:HOG000000695InterPro:IPR000999iPTMnet:Q9SZV0KEGG:ath:AT4G37510OMA:NIWDYDSPaxDb:Q9SZV0
Pfscan:PS50142PhylomeDB:Q9SZV0PIR:T04745PROSITE:PS50142ProteinModelPortal:Q9SZV0Proteomes:UP000006548RefSeq:NP_195467.1
SMART:SM00535STRING:3702.AT4G37510.1SUPFAM:SSF69065TAIR:AT4G37510UniGene:At.22038UniGene:At.46639UniGene:At.70783
UniProt:Q9SZV0
Coordinates (TAIR10) chr4:-:17626259..17628854
Molecular Weight (calculated) 62435.60 Da
IEP (calculated) 9.68
GRAVY (calculated) -0.47
Length 537 amino acids
Sequence (TAIR10)
(BLAST)
001: MELCSSSPSS SLLRICSSSA PEISFSSSIS QFPSKTQSIL TKSRFQNLRI CASVTAETQG LPRDSPQRLL KELAQRKTAT GPKKKVPPKR FILRPPLDDK
101: KLAERFLNSP QLSLKSFPLL SSCLPSSKLN NADKTWIDEY LLEVKQALGY SLEPSESLGD DNPAKHFDTL LYLAFQHPSC DRARARHVKN GHSRLWFLGQ
201: YVLELALTEF FLQRYPRESP GPMRERVFAL IGKRYLPKWI KAASLQNLIF PYDDMDKLIR KEREPPVKSV FWALFGAIYL CFGMPEVYRV LFEVFGMDPD
301: ADECQPRSRR QLEDVDYVSV EFEGKKLGWQ DIATYKPPED ALFAHPRLFR ACVPPGMHRF RGNIWDFDSK PKVMQTLGYP LTMNDRIKEI TEARNIELGL
401: GLQLCFLHPS KHKFEHPRFC FERLEYVGQK IQDIAMAERL LMKHLDAPGK WLQEKHRRLL MNKFCGRYLR EKRLHNFIIY SEEVHDRYEH NRRLRNPATT
501: AVQQAIHGLA YTIYGKPDVR RLMFEVFDFE QIQPKAV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)