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AT4G37450.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21849816 (2011): plasma membrane
  • PMID:21165646 (2011): plasma membrane
  • PMID:17294240 (2007): extracellular region plant-type cell wall
  • PMID:17294240 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : arabinogalactan protein 18
Curator
Summary (TAIR10)
AGP18 is a lysine-rich arabinogalactan-protein (AGP) and part of a multi-gene family of glycoproteins with approx. 50 members. It falls into one subclass with AGP17 and AGP19, other lysine-rich AGPs. It is expressed in young leaves, shoots, roots and flowers.
Computational
Description (TAIR10)
arabinogalactan protein 18 (AGP18); BEST Arabidopsis thaliana protein match is: arabinogalactan protein 17 (TAIR:AT2G23130.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:15181eggNOG:ENOG410JKDIeggNOG:ENOG41119DPEMBL:AF305940EMBL:AF411780EMBL:AL035601EMBL:AL161591
EMBL:AY094028EMBL:CP002687EnsemblPlants:AT4G37450EnsemblPlants:AT4G37450.1entrez:829900GeneID:829900Genevisible:Q9FPR2
GO:GO:0005886GO:GO:0009554GO:GO:0031225Gramene:AT4G37450.1hmmpanther:PTHR37209hmmpanther:PTHR37209:SF2HOGENOM:HOG000029143
InParanoid:Q9FPR2IntAct:Q9FPR2KEGG:ath:AT4G37450OMA:AWAVLVMPaxDb:Q9FPR2Pfam:Q9FPR2PIR:T04739
PRIDE:Q9FPR2PRO:PR:Q9FPR2ProteinModelPortal:Q9FPR2Proteomes:UP000006548RefSeq:NP_568027.1STRING:3702.AT4G37450.1TAIR:AT4G37450
tair10-symbols:AGP18tair10-symbols:ATAGP18UniGene:At.2789UniGene:At.74806UniProt:Q9FPR2
Coordinates (TAIR10) chr4:-:17605926..17606734
Molecular Weight (calculated) 20490.20 Da
IEP (calculated) 9.84
GRAVY (calculated) -0.15
Length 209 amino acids
Sequence (TAIR10)
(BLAST)
001: MDRNFLLTVT LICIVVAGVG GQSPISSPTK SPTTPSAPTT SPTKSPAVTS PTTAPAKTPT ASASSPVESP KSPAPVSESS PPPTPVPESS PPVPAPMVSS
101: PVSSPPVPAP VADSPPAPVA APVADVPAPA PSKHKKTTKK SKKHQAAPAP APELLGPPAP PTESPGPNSD AFSPGPSADD QSGAASTRVL RNVAVGAVAT
201: AWAVLVMAF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)