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AT4G37280.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : MRG family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
MRG family protein; FUNCTIONS IN: chromatin binding; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone H4 acetyltransferase, NuA4 complex, Eaf3/MRG15 subunit (InterPro:IPR017398), MRG (InterPro:IPR008676), Chromo domain (InterPro:IPR000953); BEST Arabidopsis thaliana protein match is: MRG family protein (TAIR:AT1G02740.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XR9FeggNOG:KOG3001EMBL:AL161591EMBL:AY037193
EMBL:AY142038EMBL:CP002687EMBL:Z99707EnsemblPlants:AT4G37280
EnsemblPlants:AT4G37280.1entrez:829882GeneID:829882Genevisible:Q94C32
GO:GO:0000123GO:GO:0006338GO:GO:0006351GO:GO:0006355
GO:GO:0016573Gramene:AT4G37280.1hmmpanther:PTHR10880hmmpanther:PTHR10880:SF15
HOGENOM:HOG000190863InParanoid:Q94C32IntAct:Q94C32InterPro:IPR000953
InterPro:IPR008676InterPro:IPR016197InterPro:IPR025995InterPro:IPR026541
iPTMnet:Q94C32KEGG:ath:AT4G37280KO:K11339OMA:KPSLYFE
PANTHER:PTHR10880PaxDb:Q94C32Pfam:PF05712Pfam:PF11717
Pfam:Q94C32Pfscan:PS51640PhylomeDB:Q94C32PIR:E85440
PIRSF:PIRSF038133PRIDE:Q94C32PRO:PR:Q94C32PROSITE:PS51640
ProteinModelPortal:Q94C32Proteomes:UP000006548RefSeq:NP_568021.1SMART:SM00298
SMR:Q94C32STRING:3702.AT4G37280.1SUPFAM:SSF54160TAIR:AT4G37280
UniGene:At.4665UniProt:Q94C32
Coordinates (TAIR10) chr4:-:17546748..17549362
Molecular Weight (calculated) 36384.90 Da
IEP (calculated) 9.80
GRAVY (calculated) -0.92
Length 320 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSSSKEETA SDGDTASGGA SPSNDGRLFS EGERVLAYHG PRVYGAKVQK VELRKKEWKY FVHYLGWNKN WDEWVSADRL LKHTEENLVK QKALDKKQGV
101: EKGTKSGRSA QTKTRSSADT KADKDDTKTN AAKGKKRKHE SGNEKDNVTA EKLMKIQIPA SLKKQLTDDW EYIAQKDKVV KLPRSPNVDE ILSKYLEFKT
201: KKDGMVTDSV AEILKGIRSY FDKALPVMLL YKKERRQYQE SIVDDTSPST VYGAEHLLRL FVKLPDLFSY VNMEEETWSR MQQTLSDFLK FIQKNQSTFL
301: LPSAYDSDKV SDGKGKGKDD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)