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AT4G37170.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G22070.1); Has 43848 Blast hits to 14238 proteins in 253 species: Archae - 0; Bacteria - 12; Metazoa - 20; Fungi - 118; Plants - 43065; Viruses - 0; Other Eukaryotes - 633 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AL161590EMBL:CP002687
EMBL:Z99707EnsemblPlants:AT4G37170EnsemblPlants:AT4G37170.1entrez:829871
Gene3D:1.25.40.10GeneID:829871Genevisible:O23169GO:GO:0008270
Gramene:AT4G37170.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF97HOGENOM:HOG000237570
InParanoid:O23169InterPro:IPR002885InterPro:IPR011990InterPro:IPR032867
KEGG:ath:AT4G37170OMA:EQDIGYHPaxDb:O23169Pfam:O23169
Pfam:PF01535Pfam:PF13041Pfam:PF13812Pfam:PF14432
Pfscan:PS51375PhylomeDB:O23169PIR:B85439PRIDE:O23169
PRO:PR:O23169PROSITE:PS51375ProteinModelPortal:O23169Proteomes:UP000006548
RefSeq:NP_195434.1SMR:O23169STRING:3702.AT4G37170.1SUPFAM:SSF48452
TAIR:AT4G37170TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.65464
UniProt:O23169
Coordinates (TAIR10) chr4:-:17498580..17500655
Molecular Weight (calculated) 78030.70 Da
IEP (calculated) 7.90
GRAVY (calculated) -0.29
Length 691 amino acids
Sequence (TAIR10)
(BLAST)
001: MNHSNARKLT TLHGFILKRN LSSFHASLKR FSDKKFFNPN HEDGGVVVER LCRANRFGEA IDVLCGQKLL REAVQLLGRA KKPPASTYCN LIQVCSQTRA
101: LEEGKKVHEH IRTSGFVPGI VIWNRLLRMY AKCGSLVDAR KVFDEMPNRD LCSWNVMVNG YAEVGLLEEA RKLFDEMTEK DSYSWTAMVT GYVKKDQPEE
201: ALVLYSLMQR VPNSRPNIFT VSIAVAAAAA VKCIRRGKEI HGHIVRAGLD SDEVLWSSLM DMYGKCGCID EARNIFDKIV EKDVVSWTSM IDRYFKSSRW
301: REGFSLFSEL VGSCERPNEY TFAGVLNACA DLTTEELGKQ VHGYMTRVGF DPYSFASSSL VDMYTKCGNI ESAKHVVDGC PKPDLVSWTS LIGGCAQNGQ
401: PDEALKYFDL LLKSGTKPDH VTFVNVLSAC THAGLVEKGL EFFYSITEKH RLSHTSDHYT CLVDLLARSG RFEQLKSVIS EMPMKPSKFL WASVLGGCST
501: YGNIDLAEEA AQELFKIEPE NPVTYVTMAN IYAAAGKWEE EGKMRKRMQE IGVTKRPGSS WTEIKRKRHV FIAADTSHPM YNQIVEFLRE LRKKMKEEGY
601: VPATSLVLHD VEDEQKEENL VYHSEKLAVA FAILSTEEGT AIKVFKNLRS CVDCHGAIKF ISNITKRKIT VRDSTRFHCF ENGQCSCGDY W
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)