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AT4G37120.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pre-mRNA splicing Prp18-interacting factor
Curator
Summary (TAIR10)
Encodes a zinc finger containing protein similar to step II splicing factors that is similar to SMP1. SMP2 is also reduced in SMP1 epigenetic alleles; plants make smaller organs having reduced cell numbers but increased cell size.
Computational
Description (TAIR10)
SWELLMAP 2 (SMP2); CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878), Pre-mRNA splicing Prp18-interacting factor (InterPro:IPR021715); BEST Arabidopsis thaliana protein match is: Pre-mRNA splicing Prp18-interacting factor (TAIR:AT1G65660.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XPPPeggNOG:KOG2560EMBL:AL161590EMBL:AY056418EMBL:CP002687EMBL:Z99707EnsemblPlants:AT4G37120
EnsemblPlants:AT4G37120.1entrez:829866GeneID:829866Genevisible:O23174GO:GO:0000375GO:GO:0003727GO:GO:0005681
GO:GO:0006397GO:GO:0008270GO:GO:0008284GO:GO:0008380Gramene:AT4G37120.1hmmpanther:PTHR12942hmmpanther:PTHR12942:SF2
HOGENOM:HOG000194391InParanoid:O23174InterPro:IPR021715iPTMnet:O23174KEGG:ath:AT4G37120KO:K12819ncoils:Coil
OMA:KNNNENGPaxDb:O23174Pfam:O23174Pfam:PF11708PhylomeDB:O23174PIR:E85438PRIDE:O23174
PRO:PR:O23174ProteinModelPortal:O23174Proteomes:UP000006548RefSeq:NP_568017.1STRING:3702.AT4G37120.1TAIR:AT4G37120tair10-symbols:SMP2
UniGene:At.4652UniProt:O23174
Coordinates (TAIR10) chr4:+:17486679..17489123
Molecular Weight (calculated) 62059.50 Da
IEP (calculated) 6.53
GRAVY (calculated) -1.17
Length 536 amino acids
Sequence (TAIR10)
(BLAST)
001: MATASVAFKS REDHRKKLEL EEARKAGLAP AEVDEDGKEI NPHIPEYMSK APWYLKSEQP SLKHQKNWKI EPEPKKIWYD RGKKIYQAEQ YRKGACINCG
101: AMTHSSKACM DRPRKIGAKY TNMNIAADEK IESFELDYDG KRDRWNGYDT STYRHVVDRY DAKEEARKKY LKEQQLKKLE EKNNNENGDD ATSDGEEDLD
201: DLRVDEAKVD ESRQMDFAKV EKRVRTTGGG STGTVRNLRI REDTAKYLLN LDVNSAHYDP KTRSMREDPL PDADPNEKFY LGDNQYRNSG QALEFKQINI
301: HSCEAFDKGH DMHMQAAPSQ AELLYKNFKV AKEKLKTQTK DTIMEKYGNA ATEGEIPMEL LLGQSERQIE YDRAGRIMKG QEVIIPKSKY EEDVHANNHT
401: SVWGSWWKDH QWGYKCCQQT IRNSYCTGSA GIEAAEASID LMKANIARKE ASKESPKKVE EKKMATWGTD IPEDLELNEE ALANALKKED LSRREEKDER
501: KRKYNVNYTN DVTSEEMEAY RMKRVHHEDP MRNFPG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)