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AT4G37010.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : centrin 2
Curator
Summary (TAIR10)
Encodes a member of the Centrin family. Mutants are hypersensitive to UV and prone to UV induced DNA damage. Based on sequence similarity and mutant phenotype CEN2 is thought to be involved in nucelotide excision repair/DNA repair.
Computational
Description (TAIR10)
centrin 2 (CEN2); FUNCTIONS IN: calcium ion binding; INVOLVED IN: DNA repair; LOCATED IN: cytoplasm; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: centrin2 (TAIR:AT3G50360.1); Has 28959 Blast hits to 19034 proteins in 1566 species: Archae - 1; Bacteria - 97; Metazoa - 12402; Fungi - 5615; Plants - 6440; Viruses - 0; Other Eukaryotes - 4404 (source: NCBI BLink).
Protein Annotations
BioGrid:15136eggNOG:COG5126eggNOG:KOG0028EMBL:AL161590EMBL:AY086644EMBL:AY363869EMBL:BT024826
EMBL:CP002687EMBL:Z99707EnsemblPlants:AT4G37010EnsemblPlants:AT4G37010.1entrez:829855ExpressionAtlas:O23184Gene3D:1.10.238.10
GeneID:829855Genevisible:O23184GO:GO:0005509GO:GO:0005634GO:GO:0005737GO:GO:0006281hmmpanther:PTHR23050
HOGENOM:HOG000233018InParanoid:O23184IntAct:O23184InterPro:IPR002048InterPro:IPR011992InterPro:IPR018247PaxDb:O23184
Pfam:O23184Pfam:PF13499Pfscan:PS50222PhylomeDB:O23184PIR:B85437PRIDE:O23184PRO:PR:O23184
PROSITE:PS00018PROSITE:PS50222ProteinModelPortal:O23184Proteomes:UP000006548Reactome:R-ATH-5696394Reactome:R-ATH-5696395RefSeq:NP_195418.1
scanprosite:PS00018SMART:SM00054SMR:O23184STRING:3702.AT4G37010.2SUPFAM:SSF47473TAIR:AT4G37010tair10-symbols:CEN2
UniGene:At.43735UniProt:O23184
Coordinates (TAIR10) chr4:+:17444421..17445380
Molecular Weight (calculated) 19157.60 Da
IEP (calculated) 4.43
GRAVY (calculated) -0.78
Length 167 amino acids
Sequence (TAIR10)
(BLAST)
001: MSEAAQLRRG LKPKGKTYGL TNQKRREIRE IFDLFDIDGS GSIDASELNV AMRSLGFEMN NQQINELMAE VDKNQSGAID FDEFVHMMTT KFGERDSIDE
101: LSKAFKIIDH DNNGKISPRD IKMIAKELGE NFTDNDIEEM IEEADRDKDG EVNLEEFMKM MKRTSYG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)