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AT4G36880.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
peroxisome 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : cysteine proteinase1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
cysteine proteinase1 (CP1); FUNCTIONS IN: cysteine-type peptidase activity, cysteine-type endopeptidase activity; INVOLVED IN: proteolysis, response to gibberellin stimulus, response to red light; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain (InterPro:IPR013128), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: Granulin repeat cysteine protease family protein (TAIR:AT5G43060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G36880-MONOMEREC:3.4.22.-eggNOG:COG4870eggNOG:KOG1543EMBL:AL161590EMBL:AY043294EMBL:CP002687
EMBL:Z99707EnsemblPlants:AT4G36880EnsemblPlants:AT4G36880.1entrez:829841ExpressionAtlas:Q94B08GeneID:829841Genevisible:Q94B08
GO:GO:0008234Gramene:AT4G36880.1hmmpanther:PTHR12411hmmpanther:PTHR12411:SF349HOGENOM:HOG000230773InParanoid:Q94B08InterPro:IPR000169
InterPro:IPR000668InterPro:IPR013128InterPro:IPR013201InterPro:IPR025660InterPro:IPR025661KEGG:ath:AT4G36880MEROPS:C01.021
ncoils:CoilPANTHER:PTHR12411PaxDb:Q94B08Pfam:PF00112Pfam:PF08246Pfam:Q94B08PhylomeDB:Q94B08
PIR:E85435PRIDE:Q94B08PRINTS:PR00705PRO:PR:Q94B08PROSITE:PS00139PROSITE:PS00639PROSITE:PS00640
ProteinModelPortal:Q94B08Proteomes:UP000006548RefSeq:NP_195406.2scanprosite:PS00139scanprosite:PS00639scanprosite:PS00640SMART:SM00645
SMART:SM00848SMR:Q94B08STRING:3702.AT4G36880.1SUPFAM:SSF54001TAIR:AT4G36880tair10-symbols:CP1UniGene:At.26570
UniProt:Q0WPN3UniProt:Q94B08
Coordinates (TAIR10) chr4:-:17374692..17376180
Molecular Weight (calculated) 41640.90 Da
IEP (calculated) 7.75
GRAVY (calculated) -0.51
Length 376 amino acids
Sequence (TAIR10)
(BLAST)
001: MAPSTKVLSL LLLYVVVSLA SGDESIINDH LQLPSDGKWR TDEEVRSIYL QWSAEHGKTN NNNNGIINDQ DKRFNIFKDN LRFIDLHNEN NKNATYKLGL
101: TKFTDLTNDE YRKLYLGART EPARRIAKAK NVNQKYSAAV NGKEVPETVD WRQKGAVNPI KDQGTCGSCW AFSTTAAVEG INKIVTGELI SLSEQELVDC
201: DKSYNQGCNG GLMDYAFQFI MKNGGLNTEK DYPYRGFGGK CNSFLKNSRV VSIDGYEDVP TKDETALKKA ISYQPVSVAI EAGGRIFQHY QSGIFTGSCG
301: TNLDHAVVAV GYGSENGVDY WIVRNSWGPR WGEEGYIRME RNLAASKSGK CGIAVEASYP VKYSPNPVRG NTISSV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)