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AT4G36680.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G18520.1); Has 31603 Blast hits to 11701 proteins in 258 species: Archae - 3; Bacteria - 12; Metazoa - 242; Fungi - 164; Plants - 30323; Viruses - 0; Other Eukaryotes - 859 (source: NCBI BLink).
Protein Annotations
BioGrid:15102DNASU:829821eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AJ002597EMBL:AL161589EMBL:AY064155
EMBL:BT001003EMBL:CP002687EMBL:Z99708EnsemblPlants:AT4G36680EnsemblPlants:AT4G36680.1entrez:829821Gene3D:1.25.40.10
GeneID:829821Genevisible:Q9M065GO:GO:0005739Gramene:AT4G36680.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF506HOGENOM:HOG000239281
InParanoid:Q9M065IntAct:Q9M065InterPro:IPR002885InterPro:IPR011990KEGG:ath:AT4G36680OMA:NLWNEMVPaxDb:Q9M065
Pfam:PF01535Pfam:PF13041Pfam:Q9M065Pfscan:PS51375PhylomeDB:Q9M065PIR:B85433PIR:T52620
PRIDE:Q9M065PRO:PR:Q9M065PROSITE:PS51375ProteinModelPortal:Q9M065Proteomes:UP000006548RefSeq:NP_195386.1SMR:Q9M065
STRING:3702.AT4G36680.1TAIR:AT4G36680TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.27468UniProt:Q9M065
Coordinates (TAIR10) chr4:-:17292479..17293717
Molecular Weight (calculated) 46550.00 Da
IEP (calculated) 9.50
GRAVY (calculated) -0.46
Length 412 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSRISLRL VRRFASAAAD GTTTAPSSGK ISVSKAKSTL RKEHDPDKAL KIYANVSDHS ASPVSSRYAQ ELTVRRLAKC RRFSDIETLI ESHKNDPKIK
101: EEPFYSTLIR SYGQASMFNH AMRTFEQMDQ YGTPRSAVSF NALLNACLHS KNFDKVPQLF DEIPQRYNKI IPDKISYGIL IKSYCDSGTP EKAIEIMRQM
201: QGKGMEVTTI AFTTILSSLY KKGELEVADN LWNEMVKKGC ELDNAAYNVR IMSAQKESPE RVKELIEEMS SMGLKPDTIS YNYLMTAYCE RGMLDEAKKV
301: YEGLEGNNCA PNAATFRTLI FHLCYSRLYE QGYAIFKKSV YMHKIPDFNT LKHLVVGLVE NKKRDDAKGL IRTVKKKFPP SFLNAWKKLE EELGLYSKTD
401: AFPSSAKEAA AA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)