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AT4G36630.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.978
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Vacuolar sorting protein 39
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
EMBRYO DEFECTIVE 2754 (EMB2754); FUNCTIONS IN: small GTPase regulator activity, binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Citron-like (InterPro:IPR001180), Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 1 (InterPro:IPR019452), Armadillo-type fold (InterPro:IPR016024), Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2 (InterPro:IPR019453); Has 871 Blast hits to 660 proteins in 186 species: Archae - 0; Bacteria - 0; Metazoa - 376; Fungi - 292; Plants - 87; Viruses - 0; Other Eukaryotes - 116 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XNSXeggNOG:KOG2063EMBL:AY099879EMBL:CP002687EnsemblPlants:AT4G36630EnsemblPlants:AT4G36630.1entrez:829815
GeneID:829815GO:GO:0005622GO:GO:0006886GO:GO:0009506GO:GO:0016192GO:GO:0030897GO:GO:0097576
Gramene:AT4G36630.1hmmpanther:PTHR12894hmmpanther:PTHR12894:SF10HOGENOM:HOG000083666InterPro:IPR000547InterPro:IPR001180InterPro:IPR017986
InterPro:IPR019452InterPro:IPR019453InterPro:IPR032914KEGG:ath:AT4G36630OMA:CLGPIKMPANTHER:PTHR12894:SF10Pfam:PF00637
Pfam:PF00780Pfam:PF10366Pfam:PF10367Pfscan:PS50219PhylomeDB:Q8L5Y0PROSITE:PS50219Proteomes:UP000006548
RefSeq:NP_195381.6SMR:Q8L5Y0STRING:3702.AT4G36630.1SUPFAM:SSF50978TAIR:AT4G36630tair10-symbols:EMB2754UniGene:At.44832
UniProt:Q8L5Y0
Coordinates (TAIR10) chr4:-:17272088..17276524
Molecular Weight (calculated) 110645.00 Da
IEP (calculated) 6.99
GRAVY (calculated) -0.19
Length 1000 amino acids
Sequence (TAIR10)
(BLAST)
001: MVHNAYDSFQ LLKDCPARID AVESYGSKLF AGCYDGSLRI YSPPESSASD PSELHQETYV LEKTVAGFSK KPIVAMEVLA SRELLLSLSE SIAFHGLPNL
101: ETVAVITKAK GANAYSWDDR RGFLCFSRQK RVCVFKHDGG GGFVEVRDYG VPDTVKSISW CGENICLGIK KEYVILNTAN GTLSEVFPSG RVAPPLVISL
201: PSGELILGKE NIGVFVDQNG KLLQTERICW SEAPTSIVIQ NPYAIALLPR RVEVRLLRSP YPLIQTIVLQ NIRRLVKSNN AVIVGLDNSV YVLFPVSIGA
301: QIVQLTASGN FEEALALCKV LPPDESSLRA AKESSIHTRF AHYLFENGSY EEAMEHFLAS QVDITHVLSM YPSIILPKTT IIPQPDKMVD ISGDEASLSR
401: GSSGISDDME SSSPRYFLES EDNADLESKK MSHNTLMALI KYLLKRRPAV IEKATSEGTE EVISDAVGKT YGANDSSKSK KSSKGRGMIP LNSGAREMAA
501: ILDTALLQAL LHTGQSGAAI ELLKGVNYSD VKICEEILMK SKNYSALLEL FKSNSMHHEA LKLLNQLADE SKTNQSQTDV TQIFSPELII EYLKPLCRTD
601: PMLVLEYSML VLESCPTQTI DLFLSGNISA DLVNSYLKQH APNMQGRYLE LMMAMNDTAV SGNLQNEMVQ IYLSEVLDLY AAKSAQQKWD EKDHPPERKK
701: LLSALESISG YSPQPLLKRL PRDALYEERA VILGKMNQHE LALSIYVHKL HAPDLALAYC DRIYESVTYL PSGKPSSNIY LTVLQIYLNP KKSAKDFAKR
801: IVALGSFESS DTTKMMDSVL SSKAKGGRSK KIVAIEGAED MRVGLSSSTD SGRSDVDTEE PLEEGDSTVM ISEVLDLLSQ RWERINGAQA LKLLPRETKL
901: HNLLPFLAPL LRNSSEAHRN FSVIKSLRQS ENLQVKEELY KHRKGVAQVT SESMCSLCNK KIGTSVFAVY PNGKTLVHFV CFRDSQGMKA VSKTTHGRRR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)