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AT4G36620.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : GATA transcription factor 19
Curator
Summary (TAIR10)
Encodes a member of the GATA factor family of zinc finger transcription factors.
Computational
Description (TAIR10)
GATA transcription factor 19 (GATA19); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA type zinc finger transcription factor family protein (TAIR:AT3G50870.1); Has 2155 Blast hits to 2054 proteins in 231 species: Archae - 0; Bacteria - 0; Metazoa - 386; Fungi - 885; Plants - 786; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5641eggNOG:KOG1601EMBL:AB493721EnsemblPlants:AT4G36620
EnsemblPlants:AT4G36620.1entrez:829814ExpressionAtlas:C0SVL8Gene3D:3.30.50.10
GeneID:829814GO:GO:0003700GO:GO:0008270GO:GO:0043565
Gramene:AT4G36620.1hmmpanther:PTHR10071hmmpanther:PTHR10071:SF156InterPro:IPR000679
InterPro:IPR013088KEGG:ath:AT4G36620OMA:ANNEYSYPaxDb:C0SVL8
Pfam:PF00320Pfam:Q6QPM2Pfscan:PS50114PhylomeDB:C0SVL8
PRIDE:C0SVL8PROSITE:PS00344PROSITE:PS50114ProteinModelPortal:C0SVL8
RefSeq:NP_195380.1scanprosite:PS00344SMART:SM00401SMR:C0SVL8
STRING:3702.AT4G36620.1SUPFAM:SSF57716TAIR:AT4G36620tair10-symbols:GATA19
UniGene:At.54634UniProt:C0SVL8UniProt:Q6QPM2
Coordinates (TAIR10) chr4:-:17268906..17269662
Molecular Weight (calculated) 23320.50 Da
IEP (calculated) 7.29
GRAVY (calculated) -0.81
Length 211 amino acids
Sequence (TAIR10)
(BLAST)
001: MGFSMFFSPE NDVSHHSSPY ASVDCTLSLG TPSTRLCNED DERRFSSHTS DTIGWDFLNG SKKGGGGGGH NLLARRCANC DTTSTPLWRN GPRGPKSLCN
101: ACGIRFKKEE RRASTARNST SGGGSTAAGV PTLDHQASAN YYYNNNNQYA SSSPWHHQHN TQRVPYYSPA NNEYSYVDDV RVVDHDVTTD PFLSWRLNVA
201: DRTGLVHDFT M
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)