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AT4G36590.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : MADS-box transcription factor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
MADS-box transcription factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: embryo, flower, pollen tube, endosperm; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 62 (TAIR:AT5G60440.1); Has 5575 Blast hits to 5575 proteins in 664 species: Archae - 0; Bacteria - 0; Metazoa - 627; Fungi - 304; Plants - 4578; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5068eggNOG:KOG0014EMBL:AL161589EMBL:AY086178EMBL:AY141234EMBL:CP002687EMBL:DQ446902
EMBL:Z99708EnsemblPlants:AT4G36590EnsemblPlants:AT4G36590.1entrez:829811GeneID:829811GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0005829GO:GO:0006351Gramene:AT4G36590.1hmmpanther:PTHR11945hmmpanther:PTHR11945:SF230IntAct:O23222
InterPro:IPR002100KEGG:ath:AT4G36590ncoils:CoilOMA:FNYNPNMPfam:PF00319Pfscan:PS50066PhylomeDB:O23222
PIR:A85432PRINTS:PR00404PROSITE:PS50066Proteomes:UP000006548RefSeq:NP_195377.1SMART:SM00432SMR:O23222
STRING:3702.AT4G36590.1SUPFAM:SSF55455TAIR:AT4G36590UniGene:At.31315UniProt:O23222
Coordinates (TAIR10) chr4:-:17261146..17262189
Molecular Weight (calculated) 28471.90 Da
IEP (calculated) 9.64
GRAVY (calculated) -0.63
Length 248 amino acids
Sequence (TAIR10)
(BLAST)
001: MVRSTKGRQK IEMKKMENES NLQVTFSKRR FGLFKKASEL CTLSGAEILL IVFSPGGKVF SFGHPSVQEL IHRFSNPNHN SAIVHHQNNN LQLVETRPDR
101: NIQYLNNILT EVLANQEKEK QKRMVLDLLK ESREQVGNWY EKDVKDLDMN ETNQLISALQ DVKKKLVREM SQYSQVNVSQ NYFGQSSGVI GGGNVGIDLF
201: DQRRNAFNYN PNMVFPNHTP PMFGYNNDGV LVPISNMNYM SSYNFNQS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)