suba logo
AT4G36540.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : BR enhanced expression 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BR enhanced expression 2 (BEE2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT2G18300.2); Has 2056 Blast hits to 2048 proteins in 102 species: Archae - 0; Bacteria - 0; Metazoa - 23; Fungi - 31; Plants - 2000; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
BioGrid:15088eggNOG:ENOG410JUSHeggNOG:ENOG41106KKEMBL:AF370231
EMBL:AF488591EMBL:AL161589EMBL:AY054588EMBL:AY059122
EMBL:AY084997EMBL:AY138254EMBL:BT000388EMBL:CP002687
EMBL:Z99708EnsemblPlants:AT4G36540EnsemblPlants:AT4G36540.1entrez:829806
Gene3D:4.10.280.10GeneID:829806Genevisible:Q93VJ4GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0006355
hmmpanther:PTHR12565hmmpanther:PTHR12565:SF132InParanoid:Q93VJ4IntAct:Q93VJ4
InterPro:IPR011598InterPro:IPR031064KEGG:ath:AT4G36540OMA:ELQSFRH
PANTHER:PTHR12565:SF132PaxDb:Q93VJ4Pfam:PF00010Pfam:Q93VJ4
Pfscan:PS50888PhylomeDB:Q93VJ4PIR:D85431PRIDE:Q93VJ4
PRO:PR:Q93VJ4PROSITE:PS00678PROSITE:PS50888ProteinModelPortal:Q93VJ4
Proteomes:UP000006548RefSeq:NP_195372.1RefSeq:NP_849508.1SMART:SM00353
STRING:3702.AT4G36540.1SUPFAM:SSF47459TAIR:AT4G36540tair10-symbols:BEE2
UniGene:At.25403UniProt:Q93VJ4
Coordinates (TAIR10) chr4:+:17243699..17244965
Molecular Weight (calculated) 34675.70 Da
IEP (calculated) 7.06
GRAVY (calculated) -0.87
Length 304 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLSVLDRLK WLQQQQMVSP EFLQILGSDG REELKRVESY LGNNNDELQS FRHFPEFGPD YDTTDGCISR TSSFHMEPVK NNGHSRAITL QNKRKPEGKT
101: EKREKKKIKA EDETEPSMKG KSNMSNTETS SEIQKPDYIH VRARRGEATD RHSLAERARR EKISKKMKCL QDIVPGCNKV TGKAGMLDEI INYVQSLQQQ
201: VEFLSMKLSV INPELECHID DLSAKQFQAY FTGPPEGDSK QSIMADFRSF PLHQQGSLDY SVINSDHTTS LGAKDHTSSS WETHSQCLYN SLRTDSVSNF
301: FSLK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)