suba logo
AT4G36430.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:18998720 (2009): extracellular region
  • PMID:16356755 (2006): extracellular region
  • PMID:14595688 (2003): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Peroxidase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to other organism; LOCATED IN: cell wall; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, 4 leaf senescence stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT2G18150.1); Has 4559 Blast hits to 4526 proteins in 292 species: Archae - 0; Bacteria - 6; Metazoa - 6; Fungi - 128; Plants - 4346; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G36430-MONOMEREC:1.11.1.7eggNOG:ENOG410IIQMeggNOG:ENOG410YA1B
EMBL:AF452384EMBL:AJ286345EMBL:AL161589EMBL:AY074296
EMBL:AY117238EMBL:CP002687EMBL:Z99708EnsemblPlants:AT4G36430
EnsemblPlants:AT4G36430.1entrez:829795GeneID:829795Genevisible:O23237
GO:GO:0004601GO:GO:0005576GO:GO:0005618GO:GO:0006979
GO:GO:0020037GO:GO:0042744GO:GO:0046872Gramene:AT4G36430.1
hmmpanther:PTHR31388hmmpanther:PTHR31388:SF16HOGENOM:HOG000237557InParanoid:O23237
InterPro:IPR000823InterPro:IPR002016InterPro:IPR010255InterPro:IPR019793
InterPro:IPR019794KEGG:00940+1.11.1.7KEGG:ath:AT4G36430KO:K00430
OMA:GHTIGFFPaxDb:O23237PeroxiBase:215Pfam:O23237
Pfam:PF00141Pfscan:PS50873PhylomeDB:O23237PIR:A85430
PRIDE:O23237PRINTS:PR00458PRINTS:PR00461PRO:PR:O23237
PROSITE:PS00435PROSITE:PS00436PROSITE:PS50873ProteinModelPortal:O23237
Proteomes:UP000006548RefSeq:NP_195361.1scanprosite:PS00435scanprosite:PS00436
SMR:O23237STRING:3702.AT4G36430.1SUPFAM:SSF48113SwissPalm:O23237
TAIR:AT4G36430UniGene:At.4607UniProt:O23237
Coordinates (TAIR10) chr4:-:17204648..17205917
Molecular Weight (calculated) 36166.00 Da
IEP (calculated) 8.48
GRAVY (calculated) -0.23
Length 331 amino acids
Sequence (TAIR10)
(BLAST)
001: MARLTSFLLL LSLICFVPLC LCDKSYGGKL FPGYYAHSCP QVNEIVRSVV AKAVARETRM AASLLRLHFH DCFVQGCDGS LLLDSSGRVA TEKNSNPNSK
101: SARGFDVVDQ IKAELEKQCP GTVSCADVLT LAARDSSVLT GGPSWVVPLG RRDSRSASLS QSNNNIPAPN NTFQTILSKF NRQGLDITDL VALSGSHTIG
201: FSRCTSFRQR LYNQSGNGSP DMTLEQSFAA NLRQRCPKSG GDQILSVLDI ISAASFDNSY FKNLIENKGL LNSDQVLFSS NEKSRELVKK YAEDQGEFFE
301: QFAESMIKMG NISPLTGSSG EIRKNCRKIN S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)