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AT4G36420.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (mitochondrial marker)

At4g36420-GFP
(full-length)
mitochondrial marker-RFPoverlay

Images by Sandra Tanz

Arabidopsis cell culture (plastidal marker)

At4g36420-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein L12 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein L12 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, large ribosomal subunit; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L7/L12 (InterPro:IPR000206), Ribosomal protein L12, chloroplast (InterPro:IPR015608), Ribosomal protein L7/L12, oligomerisation (InterPro:IPR008932), Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (InterPro:IPR014719), Ribosomal protein L7/L12, C-terminal (InterPro:IPR013823); BEST Arabidopsis thaliana protein match is: Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (TAIR:AT1G70190.2); Has 8419 Blast hits to 8419 proteins in 2735 species: Archae - 0; Bacteria - 5617; Metazoa - 196; Fungi - 132; Plants - 254; Viruses - 0; Other Eukaryotes - 2220 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0222eggNOG:KOG1715EMBL:AF370294EMBL:AL161589EMBL:AY052308EMBL:AY063041EMBL:CP002687
EMBL:Z99708EnsemblPlants:AT4G36420EnsemblPlants:AT4G36420.1entrez:829794Gene3D:3.30.1390.10GeneID:829794GO:GO:0003735
GO:GO:0005840GO:GO:0006412Gramene:AT4G36420.1HAMAP:MF_00368hmmpanther:PTHR24089hmmpanther:PTHR24089:SF272HOGENOM:HOG000248814
InterPro:IPR000206InterPro:IPR008932InterPro:IPR013823InterPro:IPR014719KEGG:ath:AT4G36420KO:K02935OMA:IVDEICG
Pfam:PF00542Pfam:PF16320PhylomeDB:O23238PIR:H85429ProDom:PD001326Proteomes:UP000006548RefSeq:NP_195360.1
SMR:O23238STRING:3702.AT4G36420.1SUPFAM:SSF48300SUPFAM:SSF54736TAIR:AT4G36420TIGRfam:TIGR00855TIGRFAMs:TIGR00855
UniGene:At.4606UniProt:O23238
Coordinates (TAIR10) chr4:-:17203718..17204257
Molecular Weight (calculated) 19514.00 Da
IEP (calculated) 10.34
GRAVY (calculated) -0.22
Length 179 amino acids
Sequence (TAIR10)
(BLAST)
001: MRNLRIISSH FSRVLKSTET RSSSVQLFTI QSRSYSSPAT QSENVSKIVN ELSNLTLLET MDLTEILRQK LNISELPVMA AMMPGMSLPG SGASKSAGGE
101: GKEKKKEAKT AFDVMLQAYD AVSKIKVIKE VRTITALGLK EAKDLVEKAP TLLKKGVSKE EAEKIIEKLK AVGAKVAME
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)