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AT4G36410.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.973
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ubiquitin-conjugating enzyme 17
Curator
Summary (TAIR10)
ubiquitin-conjugating enzyme
Computational
Description (TAIR10)
ubiquitin-conjugating enzyme 17 (UBC17); FUNCTIONS IN: ubiquitin-protein ligase activity, small conjugating protein ligase activity; INVOLVED IN: response to gibberellin stimulus, ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 16 (TAIR:AT1G75440.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G36410-MONOMERBioGrid:15075EC:2.3.2.23eggNOG:COG5078eggNOG:KOG0427EMBL:AF028340EMBL:AL161589
EMBL:AY088076EMBL:CP002687EMBL:DQ027031EMBL:Z99708EnsemblPlants:AT4G36410EnsemblPlants:AT4G36410.1entrez:829793
Gene3D:3.10.110.10GeneID:829793Genevisible:O23239GO:GO:0000209GO:GO:0005524GO:GO:0005634GO:GO:0005737
GO:GO:0009739GO:GO:0031625GO:GO:0043161GO:GO:0061630Gramene:AT4G36410.1hmmpanther:PTHR24067hmmpanther:PTHR24067:SF155
HOGENOM:HOG000233453InParanoid:O23239InterPro:IPR000608InterPro:IPR016135InterPro:IPR023313KEGG:ath:AT4G36410KO:K10688
OMA:ETRWRFHPaxDb:O23239Pfam:O23239Pfam:PF00179Pfscan:PS50127PhylomeDB:O23239PIR:T52053
PRIDE:O23239PRO:PR:O23239PROSITE:PS00183PROSITE:PS50127ProteinModelPortal:O23239Proteomes:UP000006548RefSeq:NP_568004.1
scanprosite:PS00183SMR:O23239STRING:3702.AT4G36410.1SUPFAM:SSF54495TAIR:AT4G36410tair10-symbols:UBC17UniGene:At.24042
UniPathway:UPA00143UniProt:O23239
Coordinates (TAIR10) chr4:+:17201969..17202890
Molecular Weight (calculated) 18675.20 Da
IEP (calculated) 8.81
GRAVY (calculated) -0.70
Length 161 amino acids
Sequence (TAIR10)
(BLAST)
001: MTSSSESTRK GLTKIATNRL QKEFMEWQTN PPSGFKHRVS DNLQRWIIEV HGVPGTLYAN ETYQLQVEFP EHYPMEAPQV IFQHPAPLHP HIYSNGHICL
101: DVLYDSWSPA MRLSSICLSI LSMLSSSSVK QKPKDNDHYL KNCKHGRSPK ETRWRFHDDK V
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)