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AT4G36220.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21515817 (2011): endoplasmic reticulum
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:19334764 (2009): plasma membrane
  • PMID:16618929 (2006): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ferulic acid 5-hydroxylase 1
Curator
Summary (TAIR10)
encodes ferulate 5-hydroxylase (F5H). Involved in lignin biosynthesis.
Computational
Description (TAIR10)
ferulic acid 5-hydroxylase 1 (FAH1); FUNCTIONS IN: ferulate 5-hydroxylase activity, monooxygenase activity; INVOLVED IN: lignin biosynthetic process, response to UV-B, phenylpropanoid biosynthetic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: Cytochrome P450 superfamily protein (TAIR:AT5G04330.1); Has 34463 Blast hits to 34198 proteins in 1764 species: Archae - 58; Bacteria - 4180; Metazoa - 12146; Fungi - 7203; Plants - 9525; Viruses - 6; Other Eukaryotes - 1345 (source: NCBI BLink).
Protein Annotations
BioCyc:MetaCyc:AT4G36220-MONOMERBioGrid:15061EC:1.14.-.-eggNOG:COG2124eggNOG:KOG0156EMBL:AF068574EMBL:AJ295566
EMBL:AJ295567EMBL:AJ295568EMBL:AJ295569EMBL:AJ295570EMBL:AJ295571EMBL:AJ295572EMBL:AJ295573
EMBL:AJ295574EMBL:AJ295575EMBL:AJ295578EMBL:AJ295579EMBL:AL022141EMBL:AL161589EMBL:CP002687
EMBL:U38416EnsemblPlants:AT4G36220EnsemblPlants:AT4G36220.1entrez:829779Gene3D:1.10.630.10GeneID:829779Genevisible:Q42600
GO:GO:0004497GO:GO:0005506GO:GO:0005783GO:GO:0009699GO:GO:0009809GO:GO:0010224GO:GO:0016020
GO:GO:0016021GO:GO:0016709GO:GO:0020037Gramene:AT4G36220.1gramene_pathway:1.14.13.-gramene_pathway:PWY-2181gramene_pathway:PWY-361
gramene_pathway:PWY-5168gramene_plant_reactome:1119316gramene_plant_reactome:6874399hmmpanther:PTHR24298hmmpanther:PTHR24298:SF60HOGENOM:HOG000218628InParanoid:Q42600
InterPro:IPR001128InterPro:IPR002401InterPro:IPR017972KEGG:ath:AT4G36220KO:K09755OMA:PKATRLFPaxDb:Q42600
Pfam:PF00067Pfam:Q42600PhylomeDB:Q42600PIR:T04591PRIDE:Q42600PRINTS:PR00385PRINTS:PR00463
PRO:PR:Q42600PROSITE:PS00086ProteinModelPortal:Q42600Proteomes:UP000006548RefSeq:NP_195345.1scanprosite:PS00086SMR:Q42600
STRING:3702.AT4G36220.1SUPFAM:SSF48264TAIR:AT4G36220tair10-symbols:CYP84A1tair10-symbols:FAH1TMHMM:TMhelixUniGene:At.20230
UniPathway:UPA00711UniProt:Q42600
Coordinates (TAIR10) chr4:-:17137584..17139619
Molecular Weight (calculated) 58724.10 Da
IEP (calculated) 6.79
GRAVY (calculated) -0.13
Length 520 amino acids
Sequence (TAIR10)
(BLAST)
001: MESSISQTLS KLSDPTTSLV IVVSLFIFIS FITRRRRPPY PPGPRGWPII GNMLMMDQLT HRGLANLAKK YGGLCHLRMG FLHMYAVSSP EVARQVLQVQ
101: DSVFSNRPAT IAISYLTYDR ADMAFAHYGP FWRQMRKVCV MKVFSRKRAE SWASVRDEVD KMVRSVSCNV GKPINVGEQI FALTRNITYR AAFGSACEKG
201: QDEFIRILQE FSKLFGAFNV ADFIPYFGWI DPQGINKRLV KARNDLDGFI DDIIDEHMKK KENQNAVDDG DVVDTDMVDD LLAFYSEEAK LVSETADLQN
301: SIKLTRDNIK AIIMDVMFGG TETVASAIEW ALTELLRSPE DLKRVQQELA EVVGLDRRVE ESDIEKLTYL KCTLKETLRM HPPIPLLLHE TAEDTSIDGF
401: FIPKKSRVMI NAFAIGRDPT SWTDPDTFRP SRFLEPGVPD FKGSNFEFIP FGSGRRSCPG MQLGLYALDL AVAHILHCFT WKLPDGMKPS ELDMNDVFGL
501: TAPKATRLFA VPTTRLICAL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)