AT4G36150.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane, chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G45250.1); Has 23119 Blast hits to 17172 proteins in 640 species: Archae - 16; Bacteria - 1087; Metazoa - 1782; Fungi - 109; Plants - 19291; Viruses - 8; Other Eukaryotes - 826 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:17104776..17108711 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 134085.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.44 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.17 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1179 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MVDYSSSSSS SVQLSPPQHQ VFLNFRGKQL RNGFVSHLEK ALRRDGINVF IDRNETKGRD LSNLFSRIQE SRIALAIFSS MYTESYWCLD ELVKIKDCVD 0101: LGTLVVIPIF YMVDTDDVKN LKGAFGYTFW KLAKTCNGEK LDKWKQALKD VPKKLGFTLS EMSDEGESIN QIVGEVIKVL SSDVMPDLER EIPIDDPFPT 0201: GEQVPEAAPD SPPPLFGIET RLKQLEEKLD FECKDTLTIG VVGMPGIGKT TLTSMLYEKW QHDFLRCVFL HDVRKMWKDC MMDRSIFIEE LLKDDNVNQE 0301: VADFSPESLK ALLLSKKSLV VLDNVSDKKQ IEVLLGESDW IKRGSRIFIT TSDRSVIEGM VDDTYEVLRL TGRDSFEYFS YFAFSGKLCP PVRTFMNLSR 0401: LFADYAKGNP LALKILGKEL NGKDKTHWEE KLSKLMQSPN KTIQDVLRVS YDELGLSHKD VFLDVACFFR SGDEYYVRCL VESCDTEAID TVSEIKDLAS 0501: KFLINISGGR VEMHDLLYTF GKELGSQGSR RLWNHKAVVG ALKNRVGAVR GIFLDMSELK KKLPLDRSTF IKMRNLRYLK FYSSRCDREC EADSKLNFPE 0601: GLEFPLDEIR YLYWLKFPLM KLPKDFNPKN LTDFNLPYSE IEELWEGAKD TQKLKWVDLS HSRKLCNLSG LLNAESLQRL NLEGCTSLEE LPREMKRMKS 0701: LIFLNMRGCT SLRVLPRMNL ISLKTLILTN CSSIQKFQVI SDNLETLHLD GTAIGKLPTD MVKLQKLIVL NLKDCKMLGA VPEFLGKLKA LQELVLSGCS 0801: KLKTFSVPIE TMKCLQILLL DGTALKEMPK LLRFNSSRVE DLPELRRGIN GLSSLRRLCL SRNNMISNLQ IDINQLYHLK WLDLKYCKNL TSIPLLPPNL 0901: EILDAHGCEK LKTVASPMAL LKLMEQVQSK FIFTNCNNLE QVAKNSITSY AQRKSQLDAR RCYKEGGVSE ALFIACFPGS DVPSWFNYQT FGSALRLKLP 1001: PHWCDNRLST IALCAVVTFP DTQDEINRFS IECTCEFKNE LGTCIRFSCT LGGSWIESRK IDSDHVFIGY TSSSHITKHL EGSLKLKEHD KCVPTEASIE 1101: FEVIDGAGEI VNCGLSLVYE EPNHVVVERN CKGASSRRDM SVGESILSIA AGYLSNVLRF LWLGVVFFMV YGFSKIFVK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)