AT4G35985.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.761 What is SUBAcon? |
|
||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Senescence/dehydration-associated protein-related | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||
| Computational Description (TAIR10) |
Senescence/dehydration-associated protein-related; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Senescence/spartin-associated (InterPro:IPR009686); BEST Arabidopsis thaliana protein match is: Senescence/dehydration-associated protein-related (TAIR:AT2G17840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:-:17032268..17033862 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 48681.40 Da | ||||||||||||||||||||||||
| IEP (calculated) | 8.84 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||
| Length | 448 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MECSATPPKL YPTVDTSTTV APLPKSSSSS SSTNNNNLYP SINVNDLVNN IFPDPTASDS ASAPPLATEE VILTIHGAMV HLIDKSYSVE LACGDLEILR 101: LVQGDITVAV FARVGDEIQW PLTKDEPAVK VDESHYFFSL RPVKESESSD HSVNETENEM LNYGLTMASK GQEPMLEKLD KILADYSSFT AEEKQKEENV 201: LDLTAAKETS PEELKGKRKK MVEKQCTAYW TTLAPNVEDY SGVAAKLIAA GSGQLIKGIL WCGDLTMDRL MWGNDFMKKK LSKAEKERQV SPGTLKRLKR 301: VKKMTKMTEK VANGVLSGVV KVSGFFSSSV INSKAGQKLF GLLPGEMVLA TLDGFNKVCD AVEVAGRHVM KTTSDVTTEI VDHKYGAKTA QATNEGLSAA 401: GHAFGTAWTV FKIRQALNPK SAMKPSSLAK TVVKTAAKER KKGKKSSK |
||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)