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AT4G35930.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.991
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : F-box family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G61340.1); Has 94 Blast hits to 94 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IIM0eggNOG:ENOG41120GTEMBL:AL022373EMBL:AL031986EMBL:AL161588EMBL:BT015805EMBL:BT020185
EMBL:CP002687EnsemblPlants:AT4G35930EnsemblPlants:AT4G35930.1entrez:829748GeneID:829748Genevisible:Q5XF11Gramene:AT4G35930.1
hmmpanther:PTHR34049hmmpanther:PTHR34049:SF2HOGENOM:HOG000077588InParanoid:Q5XF11InterPro:IPR001810iPTMnet:Q5XF11KEGG:ath:AT4G35930
OMA:LIKIICCPaxDb:Q5XF11Pfam:Q5XF11Pfscan:PS50181PhylomeDB:Q5XF11PIR:T04703PRIDE:Q5XF11
PRO:PR:Q5XF11PROSITE:PS50181Proteomes:UP000006548RefSeq:NP_195318.2TAIR:AT4G35930UniGene:At.31370UniProt:Q5XF11
Coordinates (TAIR10) chr4:+:17019482..17020744
Molecular Weight (calculated) 36282.70 Da
IEP (calculated) 10.82
GRAVY (calculated) -0.50
Length 321 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKVSPKDLD SKTSVRKKKL KSSSNKYLKP GALVQLCYSK ASAAKSCNEL GKKRVPVFDT KSCNDLGKKR VPVFDIKHAR NNKMAVEQLN SPKSPLMLSP
101: VNVVKRSTLV RPMKFDDLQV ESNNTCKKSP LMLSPMGIVM QNTLLRTPKT PQADPCVSES QLESLPMDLL VKIVCHLHHD QLKAVFHVSQ RIRMATILAR
201: QYHFNYTTPD RSRQEMLRVM TPVPINRWPF RRGDGNPTMV SSPHTPKAPK HAPRPPSRTK LAEMKQITAV LFQDQTPFPS RCIVPSVLQR PTLFKPMAPK
301: HPRVLFYEDE LCQAVAQNNL T
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)