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AT4G35910.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.827
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Adenine nucleotide alpha hydrolases-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Adenine nucleotide alpha hydrolases-like superfamily protein; CONTAINS InterPro DOMAIN/s: Thiouridylase, cytoplasmic, subunit 2 (InterPro:IPR019407); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:15028eggNOG:ENOG410YGU3eggNOG:KOG2594EMBL:AK175937EMBL:AK220738EMBL:AL022373EMBL:AL031986
EMBL:AL161588EMBL:AY085266EMBL:BT029183EMBL:CP002687EnsemblPlants:AT4G35910EnsemblPlants:AT4G35910.1entrez:829746
Gene3D:3.40.50.620GeneID:829746Genevisible:O65628GO:GO:0000049GO:GO:0002098GO:GO:0005737GO:GO:0010311
GO:GO:0016779GO:GO:0016783GO:GO:0032447GO:GO:0034227Gramene:AT4G35910.1HAMAP:MF_03054hmmpanther:PTHR20882
HOGENOM:HOG000006111InParanoid:O65628InterPro:IPR014729InterPro:IPR019407KEGG:ath:AT4G35910KO:K14169OMA:NGYTKIM
PaxDb:O65628Pfam:O65628Pfam:PF10288PIR:T04701PRIDE:O65628PRO:PR:O65628ProteinModelPortal:O65628
Proteomes:UP000006548RefSeq:NP_567993.1STRING:3702.AT4G35910.1SUPFAM:SSF52402TAIR:AT4G35910UniGene:At.31372UniPathway:UPA00988
UniProt:O65628
Coordinates (TAIR10) chr4:-:17008817..17011014
Molecular Weight (calculated) 50401.90 Da
IEP (calculated) 5.03
GRAVY (calculated) -0.15
Length 458 amino acids
Sequence (TAIR10)
(BLAST)
001: MACNSSGCES GCYDREKDNG SKIVDDAVSG GGNHESVCVK CKCNAPMTFG DGGFDDGRFC ADCFRNNVFG KFRLAVTSHA MITPSDNVLV AFSGGSSSRV
101: SLQFVHELQI KALKNYEASR DRSLPVFGVG VAFVDETAAF PALSTEMIDA IEWVRYTVSC LSPPAKDLHV VPVESIFGSD SLDARDRLLK LLDSVPDDTG
201: KEDLLLHLKM LSLQKVAAEN GYNRLVLGSC TSRIASHVLT ATVKGRGYSL SADIQHVDAR WKVPIVLPLR DCVRLEITRL CLLDGLKTVE LACRSQCGIN
301: DLVSSFVALL QEENPSRECT IVRTAAKLTP FYFNKIPETD DSNVPMATQR RLKRFNLKYD GSMTTEAFCP ICNGPLNRSD SSELDTFEEG QESDVLYAAC
401: CSSCRFQILP QDGSSLEQFS SFLPDHMISQ VKHQKVDSQA YLREKIKDCL LLDDEEVV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)