AT4G35870.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.575 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : early-responsive to dehydration stress protein (ERD4) | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
early-responsive to dehydration stress protein (ERD4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein targeting to vacuole; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: ERD (early-responsive to dehydration stress) family protein (TAIR:AT3G21620.1); Has 901 Blast hits to 753 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 307; Fungi - 164; Plants - 325; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:16990332..16992785 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 92590.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.37 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.22 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 817 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNRNFSPAAM PPISSMTIDN SFSPPPSSGD LPEIPDAWYG NIQYLLNISV IGLLCCVSIF LFVKLRSDHR RMPGPSALFS KLLAVWKATC REIARHCGAD 101: AAQFLLIEGG SFVLLFSIAV LAVSVMLPLN LYAGTALLSD ELSKTMITHI QKGSALLWLH FVFVVIVVVI SHFGIAAIEA RLKFTRFRDG NGNISDPNAN 201: STAVFTIMVQ GLPKNLGSDR VEFEDCFRLK YPGKVYKFIV PMDLCALDDL ATELVRVRDE ITWLVAKMDS RLLPDEYENV GDNGLVFCVC SLWVRVKVLW 301: SQITERFGFT DDEKLRKLQE LRADLESQLA AYKEGRAQGA GVAFVMFKDV YTANKAVQDF RNERSRRTGK FFSVTELRLQ RNQWKVDRAP LATDIYWNHL 401: GLTKVALIVR RVIVNTILLL ILVFFSSPLA LISALVSAGR IFNAEALDSA QYWLTWVQTS GWIGSLIFQF LPNVFIFVSM YIVIPSALSY LSKFERHLTV 501: SGEQRAALLK MVCFFLVNLI ILKALVESSL ESALLKMSRC YLDGEDCKRI EEYMSPSFLS RSCVSALAFL ITSTFLGISF DLLAPIPWIK KKIQKFRKND 601: MLQLVPEQNE EYALENQEPS SNLETPLLPE NMFESPRFGD IEPMSQDLSE YPISRTSPIP KQKFDFAQYY AFNLTIFALT MIYSSFAPLV VPVGAVYFGY 701: RYIVDKYNFL YVYRVRGFPA GNEGKLMDTV LCIMRFCVDL YLVSMLLFFS VKGDSTKLQA IFTLGVLVMY KLLPSDTDRY HPALLRSIQT VDSIIDGPVD 801: YEAYSHPNFD WDTYNNR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)