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AT4G35770.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:18433418 (2008): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Rhodanese/Cell cycle control phosphatase superfamily protein
Curator
Summary (TAIR10)
Senescence-associated gene that is strongly induced by phosphate starvation. Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant.
Computational
Description (TAIR10)
SENESCENCE 1 (SEN1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 6 processes; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: sulfurtransferase protein 16 (TAIR:AT5G66040.1); Has 1680 Blast hits to 1680 proteins in 570 species: Archae - 16; Bacteria - 1250; Metazoa - 4; Fungi - 10; Plants - 192; Viruses - 0; Other Eukaryotes - 208 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-867-MONOMERBioGrid:15012BRENDA:2.8.1.1eggNOG:COG0607eggNOG:KOG1530EMBL:AL031135EMBL:AL161588
EMBL:AY078973EMBL:AY085192EMBL:AY091671EMBL:CP002687EMBL:U26944EMBL:U26945EnsemblPlants:AT4G35770
EnsemblPlants:AT4G35770.1entrez:829730ExpressionAtlas:Q38853Gene3D:3.40.250.10GeneID:829730Genevisible:Q38853GO:GO:0006979
GO:GO:0007568GO:GO:0009507GO:GO:0009579GO:GO:0009611GO:GO:0009753hmmpanther:PTHR12231HOGENOM:HOG000015173
InParanoid:Q38853IntAct:Q38853InterPro:IPR001763iPTMnet:Q38853KEGG:ath:AT4G35770OMA:CESGQMSPaxDb:Q38853
Pfam:PF00581Pfam:Q38853Pfscan:PS50206PhylomeDB:Q38853PIR:T04682PRIDE:Q38853PRO:PR:Q38853
PROSITE:PS50206ProteinModelPortal:Q38853Proteomes:UP000006548RefSeq:NP_001078496.1RefSeq:NP_195302.1SMART:SM00450SMR:Q38853
STRING:3702.AT4G35770.1SUPFAM:SSF52821TAIR:AT4G35770tair10-symbols:ATSEN1tair10-symbols:DIN1tair10-symbols:SEN1UniGene:At.24896
UniGene:At.67197UniProt:Q38853
Coordinates (TAIR10) chr4:+:16945073..16945983
Molecular Weight (calculated) 20079.90 Da
IEP (calculated) 9.21
GRAVY (calculated) -0.23
Length 182 amino acids
Sequence (TAIR10)
(BLAST)
001: METTAFNTTS RIGNWSSAIS PPLQTCGSFK CQLPTRRGVI VADLRNSNFR WRKATTTSRG NVAAEAVKIP TSVPVRVARE LAQAGYRYLD VRTPDEFSIG
101: HPTRAINVPY MYRVGSGMVK NPSFLRQVSS HFRKHDEIII GCESGQMSFM ASTDLLTAGF TAITDIAGGY VAWTENELPV EE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)